Jatropha Genome Database

JcCB0693201.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693201.20 - phase: 1 /pseudo/partial
         (89 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g089270.1 hypothetical protein chr07_pseudomolecule_I...    68   1e-12

>IMGA|Medtr7g089270.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 19566045-19564228 F
          EGN_Mt090430 20090702
          Length = 87

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 40/43 (93%)

Query: 43 RTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQYVLTPVLPT 85
          R LKAGKL EKVLKLF+ATG +EV+S+++ALNI++++TPVLPT
Sbjct: 39 RILKAGKLTEKVLKLFIATGNEEVISLVQALNIRHIVTPVLPT 81