Jatropha Genome Database

JcCB0693041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693041.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g109610.1 Acetohydroxy acid isomeroreductase; ; chr04...   323   5e-89

>IMGA|Medtr4g109610.1 Acetohydroxy acid isomeroreductase; ;
           chr04_pseudomolecule_IMGAG_V3 24593545-24589657 F
           EGN_Mt090430 20090702
          Length = 580

 Score =  323 bits (828), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 158/185 (85%), Positives = 167/185 (90%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           V+GGRDLF LLPD+FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDI VKIGLRKGSRS
Sbjct: 92  VKGGRDLFHLLPDSFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSRS 151

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           F EAR AGFTEE+GT GDIWETISGSDLV+LLISD+AQADNYEKIFS+MKPNSI      
Sbjct: 152 FNEAREAGFTEESGTLGDIWETISGSDLVLLLISDSAQADNYEKIFSHMKPNSILGLSHG 211

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS+G+DFPK+ SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA
Sbjct: 212 FLLGHLQSVGLDFPKHFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 271

Query: 267 TDVAL 271
           TDVAL
Sbjct: 272 TDVAL 276