Jatropha Genome Database
- JcCB0691451.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0691451.10 - phase: 1 /TE/partial
(129 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr1g084160.1 Ribonuclease H chr01_pseudomolecule_IMGAG_V... 63 5e-11
IMGA|Medtr2g017310.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V... 62 5e-11
IMGA|Medtr5g075600.1 Ribonuclease H; Zinc finger, U1-type; TB2/D... 60 4e-10
IMGA|Medtr8g078260.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V... 59 6e-10
IMGA|Medtr2g037840.1 Ribonuclease H; En/Spm-like transposon prot... 58 1e-09
IMGA|Medtr4g081660.1 Putative non-LTR retroelement reverse trans... 57 2e-09
IMGA|Medtr4g133450.1 Chalcone and stilbene synthases, N-terminal... 57 2e-09
IMGA|Medtr5g032220.1 Ribonuclease H chr05_pseudomolecule_IMGAG_V... 56 5e-09
IMGA|Medtr3g110120.1 RNA-directed DNA polymerase (reverse transc... 55 6e-09
IMGA|Medtr7g127550.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V... 54 2e-08
IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse transc... 53 5e-08
IMGA|Medtr7g089810.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V... 51 1e-07
IMGA|Medtr7g015340.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V... 51 2e-07
IMGA|Medtr2g017320.1 Polynucleotidyl transferase, Ribonuclease H... 50 3e-07
IMGA|Medtr2g045680.1 Polynucleotidyl transferase, Ribonuclease H... 49 6e-07
IMGA|Medtr8g122320.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V... 48 1e-06
IMGA|Medtr6g089440.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V... 46 6e-06
IMGA|Medtr2g029900.1 RNA-directed DNA polymerase (reverse transc... 45 8e-06
IMGA|Medtr7g107730.1 TIR; Disease resistance protein; Ribonuclea... 45 8e-06
>IMGA|Medtr1g084160.1 Ribonuclease H chr01_pseudomolecule_IMGAG_V3
16870634-16874775 H EGN_Mt090430 20090702
Length = 651
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 7 PTVPFVKLNTDGSL--VGSIACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAILEGLK 64
P+ VKLN DG++ GS A G + R + GF +KLG CSV +ELWAIL+ L+
Sbjct: 418 PSSGTVKLNCDGAVKDYGSRAACGGIARDSADTFLWGFSAKLGQCSVVHSELWAILKSLE 477
Query: 65 LANDMGISHLVIECDNETVVQLVNGGVAS 93
+A G+S L IE D+ V+L+ G +S
Sbjct: 478 IAKVRGMSILTIESDSLMTVKLIQQGFSS 506
>IMGA|Medtr2g017310.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
4229391-4228609 H EGN_Mt090430 20090702
Length = 200
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 2 IAWSFPTVPFVKLNTDGSLVGS---IACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWA 58
I W+ P ++KLN+DGS G+ CGG L R GR IKG++ K+G+C AE+W
Sbjct: 116 IGWNRPPEGWIKLNSDGSCKGNNEVSGCGG-LFRNSDGRWIKGYMKKIGSCDALHAEMWG 174
Query: 59 ILEGLKLANDMGISHLVIECDNETVV 84
+ GL++ + I L +E D++ ++
Sbjct: 175 VYLGLEMVSRNRIPQLTVESDSKLLI 200
>IMGA|Medtr5g075600.1 Ribonuclease H; Zinc finger, U1-type; TB2/DP1
and HVA22 related protein chr05_pseudomolecule_IMGAG_V3
27569398-27572894 E EGN_Mt090430 20090702
Length = 453
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%)
Query: 1 WIAWSFPTVPFVKLNTDGSLVGSIACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAIL 60
W W P + + KLNTDGS+ A G L+R G I FVSK ELWAI
Sbjct: 288 WCEWKKPEIGWTKLNTDGSVNKETAGFGGLLRDYRGEPICAFVSKAPQGDTFLVELWAIW 347
Query: 61 EGLKLANDMGISHLVIECDNETVVQLVN 88
GL L+ +GI + +E D+ +VV+ +N
Sbjct: 348 RGLVLSLGLGIKSIWVESDSMSVVKTIN 375
>IMGA|Medtr8g078260.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V3
15810179-15810910 H EGN_Mt090430 20090702
Length = 243
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 2 IAWSFPTVPFVKLNTDG--SLVGSIACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAI 59
+ W P +VKLNTDG S G CGG +IR G + GF +G C AELW +
Sbjct: 74 VGWKPPAEGWVKLNTDGACSSNGVAGCGG-IIRGCDGEWLGGFAKSIGMCCAYLAELWGV 132
Query: 60 LEGLKLANDMGISHLVIECDNETVVQLVNG 89
LEGL A ++G + + D+ V +NG
Sbjct: 133 LEGLNYARNLGFRAVEVNVDSLVVANCING 162
>IMGA|Medtr2g037840.1 Ribonuclease H; En/Spm-like transposon
proteins chr02_pseudomolecule_IMGAG_V3 10460834-10454483
E EGN_Mt090430 20090702
Length = 184
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 2 IAWSFPTVPFVKLNTDGSLVGSI--ACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAI 59
IAW PT P +K+N DGS G+ A G LIR G I GF G S EL+AI
Sbjct: 16 IAWHPPTAPGLKINVDGSSFGNPGRAGFGGLIRNDVGGWIHGFSESCGRVSNLLVELYAI 75
Query: 60 LEGLKLANDMGISHLVIECDNETVVQLV 87
L GL+LA D+G + +E D ++ + L+
Sbjct: 76 LNGLQLAWDLGFRIITLEPDYKSALDLI 103
>IMGA|Medtr4g081660.1 Putative non-LTR retroelement reverse
transcriptase, chr04_pseudomolecule_IMGAG_V3
17129848-17135189 E EGN_Mt090430 20090702
Length = 168
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 1 WIAWSFPTVPFVKLNTDGSLVGS--IACGGALI-------RYGPGRRIKGFVSKLGTCSV 51
+ W P + +VKLNTDG+ + S CGG L+ + G I GF +G+CS
Sbjct: 49 YFGWKPPPIGWVKLNTDGACIMSEIAGCGGDLLVTNIIQPSFSDGEWIGGFAKGVGSCSA 108
Query: 52 PEAELWAILEGLKLANDMGISHLVIECDNETVVQLVNGG 90
EL EGLK A +G S + ++ D+ VVQ++ G
Sbjct: 109 YMVELREAYEGLKYARRLGFSVVELDVDSSVVVQMIYKG 147
>IMGA|Medtr4g133450.1 Chalcone and stilbene synthases, N-terminal;
Polynucleotidyl transferase, Ribonuclease H fold;
chr04_pseudomolecule_IMGAG_V3 31981449-31979155 H
EGN_Mt090430 20090702
Length = 154
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 2 IAWSFPTVPFVKLNTDGSLVGSIACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAILE 61
I+WS P V LN+DGS+ G + G + +GTCSV ++ELW IL
Sbjct: 16 ISWSCPDEGTVALNSDGSVAGPLGTAGC-------------GANIGTCSVVQSELWGILH 62
Query: 62 GLKLANDMGISHLVIECDNETVVQLVNGGVA 92
GL++A G H+ ++ D+ + L+ G A
Sbjct: 63 GLQVAKSRGFRHVRVDSDSAEAINLITEGAA 93
>IMGA|Medtr5g032220.1 Ribonuclease H chr05_pseudomolecule_IMGAG_V3
12971255-12971979 H EGN_Mt090430 20090702
Length = 141
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 4 WSFPTVPFVKLNTDGSLVGSIACGG--ALIRYGPGRRIKGFVSKLGTCSVPEAELWAILE 61
W PT ++K+N DGS G+ G L+R G I GF GT S AEL I
Sbjct: 31 WHPPTDDYIKVNVDGSFFGNQGSAGFSGLLRDSNGIWIHGFSGSCGTTSNIFAELSTIWV 90
Query: 62 GLKLANDMGISHLVIECDNETVVQLV 87
GL+LA D+G ++ E D++ V+ L+
Sbjct: 91 GLQLATDIGHKFIIFEFDSKNVMDLI 116
>IMGA|Medtr3g110120.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
27711894-27711086 H EGN_Mt090430 20090702
Length = 241
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 2 IAWSFPTVPFVKLNTDGSLVGSIACGG--ALIRYGPGRRIKGFVSKLGTCSVPEAELWAI 59
I W P +VKLN DG+ S+ G LIR G +KG+ K+GTC AE+W +
Sbjct: 175 IGWKRPHRDWVKLNCDGAYKESLDIAGCRGLIRDSNGHWLKGYARKIGTCDALYAEMWGM 234
Query: 60 LEGLKLA 66
EGLK++
Sbjct: 235 YEGLKIS 241
>IMGA|Medtr7g127550.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
29930312-29931382 H EGN_Mt090430 20090702
Length = 239
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 2 IAWSFPTVPFVKLNTDGSLVGSIACGG--ALIRYGPGRRIKGFVSKLGTCSVPEAELWAI 59
++W P++ V LN DGS+ GG LIR G + GF K+ + E+ +
Sbjct: 75 VSWQHPSMNSVALNVDGSVFLDSNLGGFGGLIRDHTGSFLHGFFGKISRPCILHVEILGL 134
Query: 60 LEGLKLANDMGISHLVIECDNETVVQLVN 88
GLKL D G H+V D+ TVV LV
Sbjct: 135 YHGLKLCWDTGFKHVVCHSDSTTVVDLVQ 163
>IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr01_pseudomolecule_IMGAG_V3 1684225-1680716 E
EGN_Mt090430 20090702
Length = 659
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 2 IAWSFPTVPFVKLNTDGSLVGSI--ACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAI 59
+ W+ P F+K+N DGS G+ A G L+R G GF G + AEL AI
Sbjct: 490 VRWNPPPEDFIKINVDGSSFGNPGNAGFGGLLRNNRGNWTHGFSGSCGRATNLFAELSAI 549
Query: 60 LEGLKLANDMGISHLVIECDNETVVQLV 87
+GL+LA D+G +++E D++ + L+
Sbjct: 550 WKGLQLAWDLGYRSIIMESDSQVALDLI 577
>IMGA|Medtr7g089810.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
19855204-19852776 E EGN_Mt090430 20090702
Length = 144
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 4 WSFPTVPFVKLNTDGSLVGSIACG-GALIRYGPGRRIKGFVSKLGTCSVPEAELWAILEG 62
W P +++LNT G+ I+ G G + R G+ I GF C+ A+LW +L+G
Sbjct: 2 WKKPKDGWIRLNTYGASKRDISAGSGGIFRNAEGKWIGGFSRNFDRCNAYLAKLWGVLDG 61
Query: 63 LKLANDMGISHLVIECDNETVVQ 85
L++A + G + + + ++ VV
Sbjct: 62 LQIARERGFAKVELHVNSSVVVH 84
>IMGA|Medtr7g015340.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
3848455-3847173 E EGN_Mt090430 20090702
Length = 235
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 2 IAWSFPTVPFVKLNTDGS--LVGSIACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAI 59
++W P++ V LN DG+ L ++ G LIR + GF K + E+ +
Sbjct: 68 VSWQRPSMNSVALNVDGNVFLDSNLGSFGGLIRDHTSSFLHGFFGKNSRPCILHVEISGL 127
Query: 60 LEGLKLANDMGISHLVIECDNETVVQLV 87
GLKL D+GI H+V D+ TVV LV
Sbjct: 128 YHGLKLCWDIGIKHVVCHSDSTTVVDLV 155
>IMGA|Medtr2g017320.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 4230410-4229584 E
EGN_Mt090430 20090702
Length = 248
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 2 IAWSFPTVPFVKLNTDGSLVGSIACG--GALIRYGPGRRIKGFVSKLGTCSVPEAELWAI 59
++W+ P+ VK+N DGS G I CG G +IR + S +G S EAE A
Sbjct: 78 VSWTPPSDGIVKINCDGSSFGLIPCGALGFVIRDSGSNFLGAVASNIGQASSLEAEFCAF 137
Query: 60 LEGLKLANDMGISHLVIECDNETVVQLVNGG 90
L ++ A M ++HL IE D+ V+ + G
Sbjct: 138 LLAIEKAIYMHLTHLWIETDSLAVINAFHKG 168
>IMGA|Medtr2g045680.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 12676583-12675706 H
EGN_Mt090430 20090702
Length = 277
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 2 IAWSFPTVPFVKLNTDGSLVGSIACG-GALIRYGPGRRIKGFVSKLGTCSVPEAELWAIL 60
+ W P +++LNTD + I G G L R G+ I GF L C+ +EL +
Sbjct: 123 VMWKKPEGGWIRLNTDVASKRDIPTGSGGLFRNAEGKWISGFSHNLSRCNAYLSELCGVF 182
Query: 61 EGLKLANDMGISHLVIECDNETVV 84
+GL++A + G S + + D+ VV
Sbjct: 183 DGLQIARERGFSKVELHVDSSVVV 206
>IMGA|Medtr8g122320.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V3
28589012-28589449 H EGN_Mt090430 20090702
Length = 145
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 7 PTVPFVKLNTDGSLVGS--IACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAILEGLK 64
PT ++K+N D S G+ A G L+R G I+GF G S AEL IL+GL+
Sbjct: 21 PTDGYIKVNVDDSSFGNPCNASFGGLLRNHYGGWIQGFSGSCGKASNLFAELSGILQGLQ 80
Query: 65 LANDMGISHLVIECDNETVVQLV 87
LA D+G + ++ D++ + L+
Sbjct: 81 LACDLGYRSITLKFDSQVALDLI 103
>IMGA|Medtr6g089440.1 Ribonuclease H chr06_pseudomolecule_IMGAG_V3
18311885-18312196 H EGN_Mt090430 20090702
Length = 103
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 4 WSFPTVPFVKLNTDGSLVGS--IACGGALIRYGPGRRIKGFVSKLGTCSVPEAELWAILE 61
W+ ++K+N DGS + AC G L+R G I+GF G S A+ AI +
Sbjct: 25 WNLLLEGYIKINVDGSSFENPGNACFGGLLRNDMGIWIQGFSGSCGRASNLLAKFSAIWK 84
Query: 62 GLKLANDMGISHLVIECDN 80
GL+LA D+G +++E D+
Sbjct: 85 GLQLAWDLGYQFIIMESDS 103
>IMGA|Medtr2g029900.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
8113773-8113991 H EGN_Mt090430 20090702
Length = 72
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 4 WSFPTVPFVKLNTDGSLVGSIACG-GALIRYGPGRRIKGFVSKLGTCSVPEAELWAILEG 62
W +++LNTDG+ I+ G G L R G+ I F LG C+ ELW +++G
Sbjct: 2 WKKLDDGWIRLNTDGASKRDISTGSGGLFRNVEGKWISDFFRNLGRCNAYLKELWGVIDG 61
Query: 63 LKLAND 68
L++A +
Sbjct: 62 LRIARE 67
>IMGA|Medtr7g107730.1 TIR; Disease resistance protein; Ribonuclease H
chr07_pseudomolecule_IMGAG_V3 25237674-25244066 H
EGN_Mt090430 20090702
Length = 1509
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 7 PTVPFVKLNTDGSLVGSIACGG--ALIRYGPGRRIKGFVSKLGTCSVPEAELWAILEGLK 64
PT F+KLN DG + + G L R G + GF LG + +AEL+AI +GL
Sbjct: 1309 PTRRFIKLNVDGCCMDNPRSAGYGGLFRDVDGNWLGGFYGSLGFTTKMKAELYAICQGLI 1368
Query: 65 LANDMGISHLVIECD 79
A D G ++++E D
Sbjct: 1369 TAWDFGYRNILVETD 1383