Jatropha Genome Database

JcCB0669741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0669741.10 - phase: 0 /partial
         (92 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g033820.1 Transcription factor, MADS-box; Transcripti...   110   1e-25
IMGA|Medtr5g033560.1 Transcription factor, MADS-box; Transcripti...   105   6e-24
IMGA|Medtr5g075160.1 Transcription factor, K-box chr05_pseudomol...    87   2e-18
IMGA|Medtr4g121100.1 Transcription factor, MADS-box; Transcripti...    53   3e-08

>IMGA|Medtr5g033820.1 Transcription factor, MADS-box; Transcription
           factor, K-box chr05_pseudomolecule_IMGAG_V3
           13797730-13788961 E EGN_Mt090430 20090702
          Length = 227

 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 71/81 (87%), Gaps = 1/81 (1%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQL-ENSNHARLSKEVAEKTHQLRQMRGEDLRGLNV 59
           M++I+ R++LHS N+ KL  PSLELQL ENSN +RLSKEVA+K+HQLRQMRGEDL+GL++
Sbjct: 62  MREILERHHLHSKNLAKLEEPSLELQLVENSNCSRLSKEVAQKSHQLRQMRGEDLQGLSL 121

Query: 60  EELQQLEKMLESGLTRVLETK 80
           EELQQLEK LE GL RV+ETK
Sbjct: 122 EELQQLEKSLEIGLGRVIETK 142


>IMGA|Medtr5g033560.1 Transcription factor, MADS-box; Transcription
           factor, K-box chr05_pseudomolecule_IMGAG_V3
           13685560-13682703 E EGN_Mt090430 20090702
          Length = 228

 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 68/81 (83%), Gaps = 1/81 (1%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQL-ENSNHARLSKEVAEKTHQLRQMRGEDLRGLNV 59
           M++I+ R++LHS N+ KL  PSLELQL ENSN +RLS EV++K+HQLRQMRGEDL GLNV
Sbjct: 62  MREILERHHLHSKNLAKLEEPSLELQLVENSNCSRLSMEVSKKSHQLRQMRGEDLEGLNV 121

Query: 60  EELQQLEKMLESGLTRVLETK 80
           EELQQLE+ LE GL RV+E K
Sbjct: 122 EELQQLERSLEIGLGRVIENK 142


>IMGA|Medtr5g075160.1 Transcription factor, K-box
          chr05_pseudomolecule_IMGAG_V3 27334221-27336243 I
          EGN_Mt090430 20090702
          Length = 123

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query: 1  MKDIIARYNLHSNNIDKLGRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVE 60
          MKDII RY   S++I KL +P L++Q+E +  A L+KEVA++T QLR M+ ED  GLN+E
Sbjct: 19 MKDIITRYGQQSHHITKLDKP-LQVQVEKNMPAELNKEVADRTQQLRGMKSEDFEGLNLE 77

Query: 61 ELQQLEKMLESGLTRVLETK 80
           LQQLEK LESGL RV+E K
Sbjct: 78 GLQQLEKSLESGLKRVIEMK 97


>IMGA|Medtr4g121100.1 Transcription factor, MADS-box; Transcription
           factor, K-box chr04_pseudomolecule_IMGAG_V3
           28275062-28285049 F EGN_Mt090430 20090702
          Length = 239

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQLE---NSNHARLSKEVAEKTHQLRQMRGEDLRGL 57
           M+ +I R N +S N   L  PS + QL+   +SN   L K++ +K+ +LRQ+ GEDL+ L
Sbjct: 88  MQQVIERRNGYSANHRLLDYPSTDDQLQVESDSNRDTLRKKLEDKSRELRQLNGEDLQEL 147

Query: 58  NVEELQQLEKMLESGLTRVLETK 80
            V+ELQ+LE +L+  L+ V + K
Sbjct: 148 TVQELQKLEVLLKRSLSSVSKIK 170