Jatropha Genome Database

JcCB0652571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0652571.10 + phase: 1 /pseudo/partial
         (129 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g069880.1 NAD-dependent epimerase/dehydratase chr04_p...   174   9e-45
IMGA|Medtr4g069590.1 NAD-dependent epimerase/dehydratase chr04_p...   174   9e-45
IMGA|Medtr1g137650.1 NAD-dependent epimerase/dehydratase chr01_p...   152   3e-38
IMGA|Medtr3g089990.1 NAD-dependent epimerase/dehydratase chr03_p...    66   4e-12
IMGA|Medtr3g163810.1 hypothetical protein chr03_pseudomolecule_I...    58   1e-09
IMGA|Medtr5g045120.1 hypothetical protein chr05_pseudomolecule_I...    50   4e-07

>IMGA|Medtr4g069880.1 NAD-dependent epimerase/dehydratase
           chr04_pseudomolecule_IMGAG_V3 13442907-13445423 H
           EGN_Mt090430 20090702
          Length = 381

 Score =  174 bits (442), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 100/107 (93%), Gaps = 1/107 (0%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           +DV ++K+ HLL+ ++  WA+RI+FH++NIK+DSRLE L+K SDLTINLAAICTPADYNT
Sbjct: 44  IDVSSEKVNHLLD-KSHPWANRIEFHQMNIKNDSRLETLVKASDLTINLAAICTPADYNT 102

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKD 107
           RPLDTIYSNFIDA+PV+K+C+ENNKRLIHFSTCEV+GKTIGSFLP++
Sbjct: 103 RPLDTIYSNFIDAIPVIKFCTENNKRLIHFSTCEVFGKTIGSFLPEE 149


>IMGA|Medtr4g069590.1 NAD-dependent epimerase/dehydratase
           chr04_pseudomolecule_IMGAG_V3 13315393-13317913 H
           EGN_Mt090430 20090702
          Length = 381

 Score =  174 bits (442), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 100/107 (93%), Gaps = 1/107 (0%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           +DV ++K+ HLL+ ++  WA+RI+FH++NIK+DSRLE L+K SDLTINLAAICTPADYNT
Sbjct: 44  IDVSSEKVNHLLD-KSHPWANRIEFHQMNIKNDSRLETLVKASDLTINLAAICTPADYNT 102

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKD 107
           RPLDTIYSNFIDA+PV+K+C+ENNKRLIHFSTCEV+GKTIGSFLP++
Sbjct: 103 RPLDTIYSNFIDAIPVIKFCTENNKRLIHFSTCEVFGKTIGSFLPEE 149


>IMGA|Medtr1g137650.1 NAD-dependent epimerase/dehydratase
           chr01_pseudomolecule_IMGAG_V3 30536762-30537934 E
           EGN_Mt090430 20090702
          Length = 372

 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 87/113 (76%), Gaps = 18/113 (15%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           LDVY+DK+ HLLEP+TL W +RI +H LNIK+DSRLEGLIK++DL INLAAICTPADYNT
Sbjct: 49  LDVYSDKLKHLLEPDTLPWNNRIDYHSLNIKNDSRLEGLIKIADLVINLAAICTPADYNT 108

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQD 113
           RPLDTIYSNF+DA+PV                  VYGKTIGSFL KDSPLR D
Sbjct: 109 RPLDTIYSNFVDAIPV------------------VYGKTIGSFLSKDSPLRHD 143


>IMGA|Medtr3g089990.1 NAD-dependent epimerase/dehydratase
          chr03_pseudomolecule_IMGAG_V3 21339367-21336741 E
          EGN_Mt090430 20090702
          Length = 93

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 38/44 (86%)

Query: 1  LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSD 44
          LDVY+DK+ HLLEP+TL W +RI +H LNIK DSRLEGLIK+++
Sbjct: 49 LDVYSDKLKHLLEPDTLPWNNRIDYHSLNIKKDSRLEGLIKIAN 92


>IMGA|Medtr3g163810.1 hypothetical protein
          chr03_pseudomolecule_IMGAG_V3 43114562-43115720 E
          EGN_Mt090430 20090702
          Length = 103

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 28/34 (82%)

Query: 43 SDLTINLAAICTPADYNTRPLDTIYSNFIDALPV 76
          S+  INLAAICT  DYNT PLD IYSNFIDALPV
Sbjct: 45 SNRVINLAAICTTVDYNTHPLDKIYSNFIDALPV 78


>IMGA|Medtr5g045120.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 18822870-18821696 E
          EGN_Mt090430 20090702
          Length = 60

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 24/32 (75%)

Query: 45 LTINLAAICTPADYNTRPLDTIYSNFIDALPV 76
           +  LAAICT  DYNT P D IYSNFIDALPV
Sbjct: 4  FSYKLAAICTTVDYNTHPPDKIYSNFIDALPV 35