Jatropha Genome Database

JcCB0647611.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0647611.10 + phase: 0 /partial
         (108 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g119860.1 Cyclin-like F-box; chr08_pseudomolecule_IMG...   192   4e-50
IMGA|Medtr4g133940.1 Cyclin-like F-box; chr04_pseudomolecule_IMG...   165   6e-42
IMGA|Medtr3g105500.1 Kelch-motif containing protein, putative ch...    75   5e-15
IMGA|Medtr2g024470.1 Cyclin-like F-box; Galactose oxidase, centr...    60   3e-10
IMGA|Medtr4g134000.1 Cyclin-like F-box; chr04_pseudomolecule_IMG...    52   6e-08
IMGA|Medtr2g110510.1 Galactose oxidase, central; chr02_pseudomol...    51   1e-07
IMGA|Medtr3g144840.1 Cyclin-like F-box; chr03_pseudomolecule_IMG...    50   2e-07

>IMGA|Medtr8g119860.1 Cyclin-like F-box;
           chr08_pseudomolecule_IMGAG_V3 27289161-27291907 E
           EGN_Mt090430 20090702
          Length = 428

 Score =  192 bits (487), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/108 (85%), Positives = 101/108 (93%)

Query: 1   VDTTACLCRVDAGLKTVASAKKYVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP 60
           VDTTACLCRVD GL+TVA AKKYVPG+KLCL+PDIK SIHPTR+KP+RGDRSRNQSPLLP
Sbjct: 10  VDTTACLCRVDTGLRTVAGAKKYVPGTKLCLRPDIKHSIHPTRNKPARGDRSRNQSPLLP 69

Query: 61  GLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGIA 108
           GLPDDLAIACLIRVPR+EH KLRLVCKRWYRLL GNFFYS R++L +A
Sbjct: 70  GLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLIGNFFYSLRKSLRLA 117


>IMGA|Medtr4g133940.1 Cyclin-like F-box;
           chr04_pseudomolecule_IMGAG_V3 32194624-32189765 E
           EGN_Mt090430 20090702
          Length = 437

 Score =  165 bits (417), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 95/108 (87%), Gaps = 2/108 (1%)

Query: 1   VDTTACLCRVDAGLKTVASAKKYVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP 60
           VD+ +C C+VD+GLKTVA A+K+VPGSK+C+QPDI P+ H  R+K SR +++R Q PLLP
Sbjct: 22  VDSVSCYCKVDSGLKTVAGARKFVPGSKICIQPDINPNAH--RNKNSRKEKTRVQPPLLP 79

Query: 61  GLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGIA 108
           GLPDDLAIACLIRVPR+EH KLRLVCKRWYRLL+GNFFYS R++LG+A
Sbjct: 80  GLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLSGNFFYSLRKSLGMA 127


>IMGA|Medtr3g105500.1 Kelch-motif containing protein, putative
          chr03_pseudomolecule_IMGAG_V3 26417214-26417011 H
          EGN_Mt090430 20090702
          Length = 67

 Score = 75.5 bits (184), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 42/56 (75%)

Query: 43 RSKPSRGDRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFF 98
          RSK S  + +RNQ  +LPGLPDDL IA LIRVP+IEH KL LVC RW  LL+ NFF
Sbjct: 12 RSKNSYKETARNQPLILPGLPDDLDIAYLIRVPQIEHRKLHLVCNRWNNLLSENFF 67


>IMGA|Medtr2g024470.1 Cyclin-like F-box; Galactose oxidase, central;
           chr02_pseudomolecule_IMGAG_V3 6203119-6206722 E
           EGN_Mt090430 20090702
          Length = 405

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 50  DRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGN-FFYSHRRNLG 106
           D S  +  L+PGLPDD+A+ CL+R+P   H   R VCKRW+ LL     F+++R+ +G
Sbjct: 44  DHSLREELLIPGLPDDVALNCLLRLPVQSHSSCRAVCKRWHMLLGNKERFFTNRKQMG 101


>IMGA|Medtr4g134000.1 Cyclin-like F-box;
           chr04_pseudomolecule_IMGAG_V3 32229345-32228037 F
           EGN_Mt090430 20090702
          Length = 341

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 58  LLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLG 106
           L+PGLP +L + CL R+    H     VC +W RL   + FYSHR+N G
Sbjct: 7   LIPGLPSELGLECLTRLSNSSHRVALRVCNQWRRLFLSDEFYSHRKNTG 55


>IMGA|Medtr2g110510.1 Galactose oxidase, central;
           chr02_pseudomolecule_IMGAG_V3 26012364-26009887 E
           EGN_Mt090430 20090702
          Length = 364

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%)

Query: 51  RSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGI 107
           R R    LLPGL DD+A+ CL  V R  H  L  + KR+ RL++  + Y  R+ LG+
Sbjct: 13  RHRPNDSLLPGLIDDVALNCLAWVGRSNHASLSCINKRYSRLISSGYLYGLRKELGV 69


>IMGA|Medtr3g144840.1 Cyclin-like F-box;
           chr03_pseudomolecule_IMGAG_V3 37667380-37664948 E
           EGN_Mt090430 20090702
          Length = 356

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 52  SRNQ-SPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHR 102
           ++NQ S L+P LPDD+AI CL RVPR  H  L LV K  + LL+ + F++ R
Sbjct: 2   TKNQNSNLIPSLPDDVAINCLARVPRSHHTTLTLVSKPIHSLLSSSLFFTAR 53