Jatropha Genome Database

JcCB0646891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0646891.10 - phase: 0 /partial
         (72 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g012940.1 Ribosomal protein S4 chr03_pseudomolecule_I...   137   9e-34
IMGA|Medtr3g012920.1 Ribosomal protein S4 chr03_pseudomolecule_I...   137   9e-34
IMGA|Medtr4g018880.1 Ribosomal protein S4 chr04_pseudomolecule_I...   137   9e-34
IMGA|Medtr3g024710.1 Ribosomal protein S4, bacterial and organel...   137   9e-34
IMGA|AC233662_59.1 RNA-binding S4 AC233662.1 270219-271638 E EGN...   137   2e-33
IMGA|Medtr8g112490.1 Ribosomal protein S4 chr08_pseudomolecule_I...    90   3e-19

>IMGA|Medtr3g012940.1 Ribosomal protein S4
           chr03_pseudomolecule_IMGAG_V3 2297351-2295367 E
           EGN_Mt090430 20090702
          Length = 197

 Score =  137 bits (346), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 71/72 (98%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRM ++GLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>IMGA|Medtr3g012920.1 Ribosomal protein S4
           chr03_pseudomolecule_IMGAG_V3 2289880-2291742 E
           EGN_Mt090430 20090702
          Length = 197

 Score =  137 bits (346), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 71/72 (98%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRM ++GLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>IMGA|Medtr4g018880.1 Ribosomal protein S4
           chr04_pseudomolecule_IMGAG_V3 3729347-3731002 E
           EGN_Mt090430 20090702
          Length = 197

 Score =  137 bits (346), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 71/72 (98%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRM ++GLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>IMGA|Medtr3g024710.1 Ribosomal protein S4, bacterial and organelle
           form chr03_pseudomolecule_IMGAG_V3 6292777-6293640 E
           EGN_Mt090430 20090702
          Length = 197

 Score =  137 bits (346), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 71/72 (98%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRM ++GLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>IMGA|AC233662_59.1 RNA-binding S4 AC233662.1 270219-271638 E
           EGN_Mt090430 20090702
          Length = 224

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 70/72 (97%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRM ++GLLDE+QNKLDYVLALTVENFLERRLQTL FKSGMAKSIH
Sbjct: 93  EKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLAFKSGMAKSIH 152

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 153 HARVLIRQRHIR 164


>IMGA|Medtr8g112490.1 Ribosomal protein S4
           chr08_pseudomolecule_IMGAG_V3 25268278-25267020 E
           EGN_Mt090430 20090702
          Length = 116

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 47/50 (94%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLV 50
           EKNPRRIFEGEALLRRM ++GLLDE+QNKLDYVLALTVENFLE RLQTL 
Sbjct: 66  EKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLECRLQTLC 115