Jatropha Genome Database

JcCB0645811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0645811.10 - phase: 0 /pseudo
         (103 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g093160.2 General substrate transporter chr08_pseudom...   134   2e-32
IMGA|Medtr8g093160.1 General substrate transporter chr08_pseudom...   132   4e-32
IMGA|Medtr5g020190.1 General substrate transporter chr05_pseudom...   125   7e-30
IMGA|Medtr8g093170.1 General substrate transporter chr08_pseudom...    82   1e-16
IMGA|Medtr8g139840.1 General substrate transporter; Sugar transp...    50   4e-07
IMGA|Medtr2g025780.1 Sugar transporter; Major facilitator superf...    47   2e-06

>IMGA|Medtr8g093160.2 General substrate transporter
          chr08_pseudomolecule_IMGAG_V3 20370703-20376923 E
          EGN_Mt090430 20090702
          Length = 486

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 74/92 (80%), Gaps = 2/92 (2%)

Query: 1  MTSREEGDDG--LRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVALGPIQ 58
          M+ REE  DG  L+KPFLHTGSWYKMGSRQSS+MGS+T +   +VSV+ CVLI ALGPIQ
Sbjct: 1  MSFREESGDGRDLQKPFLHTGSWYKMGSRQSSVMGSTTSVMRDSVSVLFCVLIAALGPIQ 60

Query: 59 FGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          FGFTCGYSSPTQ  II DLKLS+SE  L G L
Sbjct: 61 FGFTCGYSSPTQQAIINDLKLSVSEFSLFGSL 92


>IMGA|Medtr8g093160.1 General substrate transporter
          chr08_pseudomolecule_IMGAG_V3 20370703-20376923 E
          EGN_Mt090430 20090702
          Length = 503

 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 74/92 (80%), Gaps = 2/92 (2%)

Query: 1  MTSREEGDDG--LRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVALGPIQ 58
          M+ REE  DG  L+KPFLHTGSWYKMGSRQSS+MGS+T +   +VSV+ CVLI ALGPIQ
Sbjct: 1  MSFREESGDGRDLQKPFLHTGSWYKMGSRQSSVMGSTTSVMRDSVSVLFCVLIAALGPIQ 60

Query: 59 FGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          FGFTCGYSSPTQ  II DLKLS+SE  L G L
Sbjct: 61 FGFTCGYSSPTQQAIINDLKLSVSEFSLFGSL 92


>IMGA|Medtr5g020190.1 General substrate transporter
          chr05_pseudomolecule_IMGAG_V3 7617398-7613698 E
          EGN_Mt090430 20090702
          Length = 489

 Score =  125 bits (313), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 76/91 (83%), Gaps = 4/91 (4%)

Query: 4  REEGDDG--LRKPFLHTGSWYKMGSRQSSIMGSSTQ--IRDGAVSVVLCVLIVALGPIQF 59
          RE+ +DG  L+KPFL+TGSWY+MGS+Q++I+ SSTQ  +RD +VSV+LCVLIVALGP+QF
Sbjct: 5  REDYEDGNNLKKPFLNTGSWYRMGSKQTNILNSSTQYVMRDSSVSVLLCVLIVALGPLQF 64

Query: 60 GFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          GFTCGY+SPTQ  II DL LS+SE  L G L
Sbjct: 65 GFTCGYTSPTQESIISDLNLSLSEFSLFGSL 95


>IMGA|Medtr8g093170.1 General substrate transporter
          chr08_pseudomolecule_IMGAG_V3 20377435-20382267 H
          EGN_Mt090430 20090702
          Length = 479

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 5/82 (6%)

Query: 9  DGLRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVALGPIQFGFTCGYSSP 68
          D  RKPF++  +++        I  ++     G+  +VLCVLIVALGPIQFGFTCGYSSP
Sbjct: 8  DDFRKPFVNNNNFF-----LKDINNNNNNAGSGSFYIVLCVLIVALGPIQFGFTCGYSSP 62

Query: 69 TQAEIIKDLKLSISEVRLIGFL 90
          T+A++I+DL L+IS+  L G L
Sbjct: 63 TEADMIQDLNLTISQFSLFGSL 84


>IMGA|Medtr8g139840.1 General substrate transporter; Sugar
          transporter superfamily chr08_pseudomolecule_IMGAG_V3
          34221314-34217791 E EGN_Mt090430 20090702
          Length = 503

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 2  TSREEGDDGLRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVAL-GPIQFG 60
          +  E     L++PF+  G   K  +     + S+ +  +G++ +VL    VA+ G   FG
Sbjct: 11 SGHENTHRDLQEPFIQHG---KDATVDYHDIESNKRAENGSIGMVLLSTFVAVCGSFSFG 67

Query: 61 FTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
             GYSSPTQA I  DL LSISE  + G L
Sbjct: 68 TCVGYSSPTQAAIRADLNLSISEFSMFGSL 97


>IMGA|Medtr2g025780.1 Sugar transporter; Major facilitator
          superfamily chr02_pseudomolecule_IMGAG_V3
          6901493-6907966 E EGN_Mt090430 20090702
          Length = 479

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 7/81 (8%)

Query: 11 LRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVAL-GPIQFGFTCGYSSPT 69
          L++PF+  G   K   ++   +GS   + +G++ +VL    VA+ G   FG   GYS+PT
Sbjct: 20 LQEPFIQQG---KDACKE---VGSDKSMENGSIGMVLLSTFVAVCGSFSFGTCVGYSAPT 73

Query: 70 QAEIIKDLKLSISEVRLIGFL 90
          QA I  DL LS++E  + G L
Sbjct: 74 QAAIRADLNLSLAEFSMFGSL 94