Jatropha Genome Database

JcCB0645591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0645591.10 - phase: 0 /pseudo
         (95 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3 exonuc...    86   6e-18
IMGA|Medtr7g140440.3 Zinc finger, CCHC-type; Putative 5-3 exonuc...    86   7e-18
IMGA|Medtr1g096560.1 Putative 5-3 exonuclease chr01_pseudomolecu...    85   7e-18
IMGA|Medtr7g140440.2 Zinc finger, CCHC-type; Putative 5-3 exonuc...    85   9e-18
IMGA|AC146557_9.1 Putative 5-3 exonuclease AC146557.33 43451-495...    64   2e-11

>IMGA|Medtr7g140440.1 Zinc finger, CCHC-type; Putative 5-3
          exonuclease chr07_pseudomolecule_IMGAG_V3
          33823109-33833019 E EGN_Mt090430 20090702
          Length = 956

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXN--IPVDTSRPNPNSIEYDNLYLDMNGI 58
          MGVPAFYRWLA++YP                     PVD SRPNPN +E+DNLYLDMNGI
Sbjct: 1  MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDNLYLDMNGI 60

Query: 59 IHPCFHPEDR 68
          IHPCFHP+ +
Sbjct: 61 IHPCFHPDGK 70


>IMGA|Medtr7g140440.3 Zinc finger, CCHC-type; Putative 5-3
          exonuclease chr07_pseudomolecule_IMGAG_V3
          33823109-33828323 E EGN_Mt090430 20090702
          Length = 442

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXN--IPVDTSRPNPNSIEYDNLYLDMNGI 58
          MGVPAFYRWLA++YP                     PVD SRPNPN +E+DNLYLDMNGI
Sbjct: 1  MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDNLYLDMNGI 60

Query: 59 IHPCFHPEDR 68
          IHPCFHP+ +
Sbjct: 61 IHPCFHPDGK 70


>IMGA|Medtr1g096560.1 Putative 5-3 exonuclease
          chr01_pseudomolecule_IMGAG_V3 19777863-19777303 H
          EGN_Mt090430 20090702
          Length = 107

 Score = 85.1 bits (209), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 5/68 (7%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MGVPAFYRWLA++YPL                  P+D S+PNPN IE+DNLYLDMNGIIH
Sbjct: 1  MGVPAFYRWLADRYPLSISDVVEDDDVPS-----PIDASKPNPNGIEFDNLYLDMNGIIH 55

Query: 61 PCFHPEDR 68
          PCFHP+ +
Sbjct: 56 PCFHPDGK 63


>IMGA|Medtr7g140440.2 Zinc finger, CCHC-type; Putative 5-3
          exonuclease chr07_pseudomolecule_IMGAG_V3
          33823109-33830234 E EGN_Mt090430 20090702
          Length = 629

 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXN--IPVDTSRPNPNSIEYDNLYLDMNGI 58
          MGVPAFYRWLA++YP                     PVD SRPNPN +E+DNLYLDMNGI
Sbjct: 1  MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDNLYLDMNGI 60

Query: 59 IHPCFHPEDR 68
          IHPCFHP+ +
Sbjct: 61 IHPCFHPDGK 70


>IMGA|AC146557_9.1 Putative 5-3 exonuclease AC146557.33
          43451-49538 H EGN_Mt090430 20090702
          Length = 863

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 20/69 (28%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNS--IEYDNLYLDMNGI 58
          MGVP+FYRWL  KYP                     +   PN N+  +EYDNLYLDMN I
Sbjct: 1  MGVPSFYRWLLNKYPK------------------AFEDINPNTNTTNVEYDNLYLDMNSI 42

Query: 59 IHPCFHPED 67
          IHPCFHP D
Sbjct: 43 IHPCFHPND 51