Jatropha Genome Database

JcCB0644101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0644101.10 + phase: 1 /partial
         (213 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g039870.1 Amine oxidase chr03_pseudomolecule_IMGAG_V3...   105   1e-23

>IMGA|Medtr3g039870.1 Amine oxidase chr03_pseudomolecule_IMGAG_V3
           10694186-10683854 E EGN_Mt090430 20090702
          Length = 501

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 21/216 (9%)

Query: 5   KSIHEAGIQDILILEASHRIGGRLMKTQFSGLTVEKGANWLFG-GGPVFNPXXXXXXXXX 63
           K + E G++DI++LEAS RIGGR+ K  F G++VE GA W+ G GG   NP         
Sbjct: 23  KVLSENGVEDIVMLEASDRIGGRIRKECFGGVSVELGAGWIAGVGGREANPVWELAVQHN 82

Query: 64  XXXXXNDYQNITSNTYKQNGGLYPKQVVEKIDKVATAMDDFCAAFSK-KLSVQKKDIDVS 122
                +DY N   N Y Q+G L P  + +   K A       +A  K +    ++D + +
Sbjct: 83  LKTCFSDYSNARFNIYDQSGKLIPSGIADDSYKKAVE-----SAIQKLRDEEVEEDDEEA 137

Query: 123 ILAAQRIFKKA--PTSPLEMVIDYYHNDFEDAEPPKVTSLKHTYPRNELVDHGEDEYFVA 180
                ++ K +  P +P+E+ ID+  +DFE AE           P +  VD GE E+ VA
Sbjct: 138 NDDGNKVTKPSLTPKTPVELAIDFILHDFEMAE---------VEPISTYVDFGEREFLVA 188

Query: 181 DPRGFEIIVQYLAKQFL---SSLTKDPRLKLNKVIR 213
           D RG++ ++  +A+ FL        D RLKLNKV+R
Sbjct: 189 DERGYDHLLYKMAEGFLFTSEGRILDDRLKLNKVVR 224