Jatropha Genome Database

JcCB0631101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0631101.10 + phase: 0 /pseudo
         (129 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g114530.1 D111/G-patch chr03_pseudomolecule_IMGAG_V3 ...    93   4e-20

>IMGA|Medtr3g114530.1 D111/G-patch chr03_pseudomolecule_IMGAG_V3
           29005810-29001662 E EGN_Mt090430 20090702
          Length = 516

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/52 (69%), Positives = 46/52 (88%)

Query: 54  DCSFIWDETSQLYFHSRSGIYHDPNGGWYYSSRDGLYYKFENGSYVLLESDK 105
           DC+F+WDE SQLYFH+ SG YHDPN GWYYS++DG+YYKFE+G+YV L+ +K
Sbjct: 12  DCTFVWDENSQLYFHASSGFYHDPNAGWYYSTKDGVYYKFEDGNYVPLDCNK 63