Jatropha Genome Database

JcCB0627221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0627221.10 - phase: 2 /partial
         (298 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g125320.1 Homeodomain-like, related chr01_pseudomolec...   370   e-103
IMGA|Medtr2g117610.1 Homeodomain-like, related chr02_pseudomolec...   221   3e-58
IMGA|Medtr1g073690.1 Homeodomain-like, identical chr01_pseudomol...   189   1e-48

>IMGA|Medtr1g125320.1 Homeodomain-like, related
           chr01_pseudomolecule_IMGAG_V3 27623789-27622379 E
           EGN_Mt090430 20090702
          Length = 450

 Score =  370 bits (949), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/306 (66%), Positives = 227/306 (74%), Gaps = 13/306 (4%)

Query: 1   GKKGS--PWQRVKWTDKMVRLLITAVSYIGEDVTSD-CGGGMRRKFAVLQKKGKWKSVSK 57
           GKKGS  PWQRVKWTD MVRL+ITAVSYIGED TSD  GG  RRKFAVLQKKGKW+ VSK
Sbjct: 113 GKKGSSSPWQRVKWTDNMVRLMITAVSYIGEDRTSDGVGGSGRRKFAVLQKKGKWRCVSK 172

Query: 58  VMAERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYI-DLSEKEKED 116
           VMAERG HVSPQQCEDKFNDLNKRYKKLNDMLGRGTSC+VVENPALL+ I  LSEKEK++
Sbjct: 173 VMAERGCHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCEVVENPALLDGIYYLSEKEKDE 232

Query: 117 VRKILSSKHLFYEEMCSYHNANRLHLPHDPALQRSLQLALRSKXXXXXXXXXXXXXXXXX 176
           VRKILSSK LFYEEMCSYHN NRLHLPHDPALQ S+QLALR++                 
Sbjct: 233 VRKILSSKQLFYEEMCSYHNCNRLHLPHDPALQSSMQLALRNRDDHDNDDIRRSQLDDHD 292

Query: 177 XXXXXXXXXXXXXFEENHPSRGDSKGFYGALGGSMKRLRPGLGHEDA-CFGNS--SQD-G 232
                        F++N  SRG+     G L GSMK+L+   G   A  FGNS   QD  
Sbjct: 293 EDEQDAETDEHDAFKDNCASRGE-----GRLNGSMKKLKQNQGQNHANAFGNSFNCQDYF 347

Query: 233 NKGSYSHVQIPQVDMNQISPESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFK 292
           NKGSY   Q+ Q D NQ+ PE+ RAAWLQKQW++SR +QLEEQK+QIQ E LELEKQRFK
Sbjct: 348 NKGSYPRGQMGQSDGNQVIPENMRAAWLQKQWVDSRQVQLEEQKLQIQAEKLELEKQRFK 407

Query: 293 WKRFSR 298
           W+RFS+
Sbjct: 408 WQRFSK 413


>IMGA|Medtr2g117610.1 Homeodomain-like, related
           chr02_pseudomolecule_IMGAG_V3 27677141-27675468 E
           EGN_Mt090430 20090702
          Length = 445

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 179/300 (59%), Gaps = 29/300 (9%)

Query: 1   GKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDCGGGMRRKFAVLQKKGKWKSVSKVMA 60
           GKKGSPWQR+KWTD +V LLI  VS +GED T     G++RK  V+QKKGKWK+VSK+M 
Sbjct: 104 GKKGSPWQRMKWTDNVVGLLIAVVSCVGEDGTISGVDGVKRKSGVVQKKGKWKTVSKIMI 163

Query: 61  ERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLE-YIDLSEKEKEDVRK 119
            +G HVSPQQCEDKFNDLNKRYK+LN++LGRGT CQVVENPAL++  ++LS K K+DVRK
Sbjct: 164 SKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTCCQVVENPALMDSMVNLSAKAKDDVRK 223

Query: 120 ILSSKHLFYEEMCSYHNANRLHLPHDPALQR-SLQLALRSKXXXXXXXXXXXXXXXXXXX 178
           ILSSKHLFY+EMC+YHN  R+   HD  L   SL+    S+                   
Sbjct: 224 ILSSKHLFYKEMCAYHNGQRIPNSHDLDLHSYSLEHGKDSRDHDGSDDEDEDNNESEDDE 283

Query: 179 XXXXXXXXXXXFEENHPSRGDSKGFYGALGGSMKRL--RPGLGHEDACFGNSSQDGNKGS 236
                         N  +RGD        GG M+    R  L  ED  F   S       
Sbjct: 284 LDNGI---------NINARGD--------GGRMEGFCDRNKLSEEDGHFWPQS------- 319

Query: 237 YSHVQIPQVDMNQISPESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFKWKRF 296
              ++  + +M ++  +  ++ W +++W++ + LQL+EQ V  Q +  EL+KQ+FKW R+
Sbjct: 320 -IGMKKLESEMARVFQDPVKSPWEKREWIKQQLLQLQEQNVDFQAKAFELQKQQFKWLRY 378


>IMGA|Medtr1g073690.1 Homeodomain-like, identical
           chr01_pseudomolecule_IMGAG_V3 14753080-14751391 E
           EGN_Mt090430 20090702
          Length = 495

 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 115/137 (83%), Gaps = 1/137 (0%)

Query: 2   KKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDCGGGMRRKFA-VLQKKGKWKSVSKVMA 60
           +K SPWQR+KWTD MVRLLI AV YIG++  S+     ++K + +LQKKGKWKSVS+ M 
Sbjct: 113 RKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPNKKKSSGLLQKKGKWKSVSRAMM 172

Query: 61  ERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYIDLSEKEKEDVRKI 120
           E+G +VSPQQCEDKFNDLNKRYK++ND+LG+GT+C+VVEN  LL+ +DLS K K++VRK+
Sbjct: 173 EKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQGLLDSMDLSPKMKDEVRKL 232

Query: 121 LSSKHLFYEEMCSYHNA 137
           L+SKHLF+ EMC+YHN+
Sbjct: 233 LNSKHLFFREMCAYHNS 249



 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 236 SYSHVQIPQVDMNQIS---PESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFK 292
           S S  Q+     N+IS    +  ++ W +KQW+ +R +QLEEQK+  + +  +LEKQR K
Sbjct: 382 SSSSTQLVNQMNNEISGVFQDGGKSTWEKKQWIRNRIMQLEEQKIGYESQAFQLEKQRLK 441

Query: 293 WKRFS 297
           W R+S
Sbjct: 442 WARYS 446