Jatropha Genome Database
- JcCB0619401.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0619401.10 + phase: 0 /TE/partial
(602 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 326 2e-89
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 326 2e-89
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 326 2e-89
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 322 3e-88
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 232 4e-61
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 207 1e-53
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 191 1e-48
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 172 3e-43
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 159 3e-39
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 143 3e-34
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 127 1e-29
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 123 2e-28
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 94 2e-19
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 93 3e-19
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 82 6e-16
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 77 2e-14
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 77 3e-14
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 69 5e-12
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 65 8e-11
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 58 2e-08
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 57 3e-08
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 55 1e-07
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 54 3e-07
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 52 6e-07
IMGA|Medtr8g081950.1 lectin receptor kinase, related chr08_pseud... 52 1e-06
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 51 1e-06
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 49 5e-06
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 49 6e-06
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 190/509 (37%), Positives = 287/509 (56%), Gaps = 26/509 (5%)
Query: 80 LAQGGEPENYQEAMEDCKRNEWWKAMQDEMESLHENRTYELVKLPQGKKALKNKWVFRLK 139
L EP+ Y EA K W KAMQ E+++L + T+ V LP K + +WVF++K
Sbjct: 861 LHTHNEPKTYAEAN---KHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIK 917
Query: 140 TEQNNSQPRYKARLVVKGFGQKKGVDFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVK 199
+ S RYKARLV KG+ Q +G+D+ + FSPV K++++R+++ LA+ + + QLDV
Sbjct: 918 RHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVN 977
Query: 200 TAFLHGDLEKEIYMEQPEGF---------KLQKSLYGLKQAPRQWYKKFDSFMVNHGYEK 250
AFLHGDL++ +YM P G KL KSLYGLKQA R+WY K S ++ H Y +
Sbjct: 978 NAFLHGDLQENVYMTLPPGISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQ 1037
Query: 251 TTSNHCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQIL 310
S+H +F K+ + ILL+YVDD+++ G ++ + +K L F +KDLG K L
Sbjct: 1038 AHSDHSLFTKK-TGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFL 1096
Query: 311 RMKMSRDRKQRKLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEE 370
++++ Q + L Q+KY +L+ +KP TP KL +
Sbjct: 1097 GLEVA--HSQLGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKL-------HKDGALP 1147
Query: 371 LKNIP-YASAFGSLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKI 429
++IP Y G L+Y + T+PDI + +S+FLS H +A +LRYLK
Sbjct: 1148 YEDIPSYRRLIGRLLY-LNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGK 1206
Query: 430 CLYFGDNRPV-LDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAE 488
L+F N P+ L GY+DAD G +D+R+ SG + ISW++K Q V+ SS EAE
Sbjct: 1207 GLFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAE 1266
Query: 489 YIAITKASKELLWMKKFLQELGVEQEKY-ILLCDSQSAVHLSKNSTFHLRSKHIDVRYHW 547
Y A+ A+ EL W+ LQ+L V K +L CD+QSA+H++ N FH R+KH+++ H
Sbjct: 1267 YRALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHI 1326
Query: 548 IRDALEMKLFQIEMVHTDDNGADMMTKAL 576
+R+ L + ++ V + + AD TK+L
Sbjct: 1327 VREKLHSGILKLLPVSSKEQVADFFTKSL 1355
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 190/505 (37%), Positives = 289/505 (57%), Gaps = 28/505 (5%)
Query: 85 EPENYQEAME-DCKRNEWWKAMQDEMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQN 143
EP Y EA + DC W KAMQ E+ +L + T+++V LP K + +W++++K +
Sbjct: 738 EPTTYVEASKHDC----WNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNAD 793
Query: 144 NSQPRYKARLVVKGFGQKKGVDFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFL 203
S RYKARLV KG+ Q +G+D+ E +SPV K++++R+V+ LA+ N + QLDV AFL
Sbjct: 794 GSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFL 853
Query: 204 HGDLEKEIYMEQPEGF---------KLQKSLYGLKQAPRQWYKKFDSFMVNHGYEKTTSN 254
HG+L++++YM P G KL+KSLYGLKQA RQWY+K S ++ Y + +S+
Sbjct: 854 HGELQEDVYMILPPGINIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSD 913
Query: 255 HCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKM 314
H +F+K+ D F ILL+YVDD+++ G + +++K L SF +KDLG K L +++
Sbjct: 914 HSLFIKKSSDS-FTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEV 972
Query: 315 SRDRKQRKLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNI 374
+ + L+ Q KY +L +KP+ TP KL +I
Sbjct: 973 AHSKLGISLY--QRKYCLDLLHDSGHIGSKPISTPSDPSTKL-------HHDTSTPYDDI 1023
Query: 375 P-YASAFGSLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYF 433
P Y G L+Y + T+PDI +S+FLSN H NA LRYLK L+F
Sbjct: 1024 PAYRRLVGRLLY-LNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFF 1082
Query: 434 GDNRPV-LDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAI 492
N + L G++DAD G +D+RK +G + ISW++K Q V+ SS EAEY A+
Sbjct: 1083 PRNSSLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRAL 1142
Query: 493 TKASKELLWMKKFLQELGVEQEK-YILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDA 551
A+ E+ W+ L +L + K +L CD+QSA+H++ N FH R+KH+++ H +R+
Sbjct: 1143 ASATCEIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREK 1202
Query: 552 LEMKLFQIEMVHTDDNGADMMTKAL 576
L+ + ++ V + D AD TKAL
Sbjct: 1203 LQAGVLKLLPVSSQDQIADFFTKAL 1227
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 195/522 (37%), Positives = 294/522 (56%), Gaps = 28/522 (5%)
Query: 85 EPENYQEAME-DCKRNEWWKAMQDEMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQN 143
EP Y EA + DC W +AMQ E+ +L T++LV LP K + +W++++K +
Sbjct: 883 EPTTYAEASKFDC----WKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHAD 938
Query: 144 NSQPRYKARLVVKGFGQKKGVDFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFL 203
S RYKARLV KG+ Q +G+D+ + +SPV K++++R ++ LA N I QLDV AFL
Sbjct: 939 GSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFL 998
Query: 204 HGDLEKEIYMEQPEGF---------KLQKSLYGLKQAPRQWYKKFDSFMVNHGYEKTTSN 254
HGDL++++YM P+G KL KSLYGLKQA R+WY+K S +V+H Y ++TS+
Sbjct: 999 HGDLQEDVYMIVPQGITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSD 1058
Query: 255 HCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKM 314
H +F+K+ F LL+YVDD++I G + + +K L + +KDLG K L +++
Sbjct: 1059 HSLFIKK-TYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEV 1117
Query: 315 SRDRKQRKLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNI 374
+ + + L Q KY +L+ AKP TP KL P +I
Sbjct: 1118 A--HSSQGISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGP-------PFSDI 1168
Query: 375 P-YASAFGSLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYF 433
P Y G L+Y + T+P I A +S+FL++ ++H A ILRYLK + L+F
Sbjct: 1169 PSYRRLIGRLIY-LTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFF 1227
Query: 434 G-DNRPVLDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAI 492
D+ L GY+DAD G +DSR+ SG + ISW++K Q V+ SS EAEY A+
Sbjct: 1228 PRDSSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRAL 1287
Query: 493 TKASKELLWMKKFLQELGVEQEK-YILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDA 551
A+ EL W+ L +L V K ++L CD+QSA+H++ N FH R+KH+++ H +R+
Sbjct: 1288 GAATCELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREK 1347
Query: 552 LEMKLFQIEMVHTDDNGADMMTKALPTEKLVTCRKIADMANV 593
L+ + ++ V + D AD TK L + T M N+
Sbjct: 1348 LQACIMKLLPVTSADQLADFFTKPLLPQPFHTLLFKLGMLNI 1389
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 322 bits (826), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 190/532 (35%), Positives = 302/532 (56%), Gaps = 33/532 (6%)
Query: 85 EPENYQEAME-DCKRNEWWKAMQDEMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQN 143
EP++Y EA + DC W AMQ E+++L + T++LV LP K + +W++++K +
Sbjct: 892 EPKSYAEASKLDC----WKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHAD 947
Query: 144 NSQPRYKARLVVKGFGQKKGVDFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFL 203
+ RYKARLV KG+ Q +G+D+ + +SPV K++++R+V+ L++ N + QLDV AFL
Sbjct: 948 GTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFL 1007
Query: 204 HGDLEKEIYMEQPEGF---------KLQKSLYGLKQAPRQWYKKFDSFMVNHGYEKTTSN 254
HGDL++++YM P G KL KSLYGLKQA R+WY+K S + + Y + TS+
Sbjct: 1008 HGDLQEDVYMMVPPGIKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSD 1067
Query: 255 HCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKM 314
+ +FVK+ F +LL+YVDD+++ G+ + +K L F +KDLG K L +++
Sbjct: 1068 YSLFVKK-TSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEV 1126
Query: 315 SRDRKQRKLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNI 374
+ + + L Q KY +L+ +KP+ TP S KL L +++
Sbjct: 1127 AHSK--LGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHL-------DSSSPFEDV 1177
Query: 375 PYASAF-GSLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYF 433
P G L+Y + T+PDI +S+FLS + H +A +L+YLK L+F
Sbjct: 1178 PACRRLVGRLLY-LNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFF 1236
Query: 434 GDNRPV-LDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAI 492
+ + L G++DAD G +D+R+ SG + ISW++K Q V+ SS EAEY A+
Sbjct: 1237 PRSSSLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRAL 1296
Query: 493 TKASKELLWMKKFLQELGVEQEKY-ILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDA 551
A+ EL W+ L++L K +L CD+QSA+H++ N FH R+KH+++ H IRD
Sbjct: 1297 ASATCELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDK 1356
Query: 552 LEMKLFQIEMVHTDDNGADMMTKAL---PTEKLVTCRKIADMANVPTXVCRG 600
L+ + ++ V + D AD TKAL P L++ + ++ PT C G
Sbjct: 1357 LQSGVLKLLTVSSQDQVADFFTKALLPKPFNILLSKLGLINIYQPPT--CGG 1406
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 229/463 (49%), Gaps = 70/463 (15%)
Query: 19 HEFPVSLDAEPHVEPQNDEKDDGEPVQNDAEPAPIE-----ELPQLRRSAR--------- 64
H++P S D + + + +N P I +PQLRRS R
Sbjct: 221 HDYPTSYDDQDYSSKETTTSPTHITPENSTSPTHITPENSTSIPQLRRSQRLHKTPTYLT 280
Query: 65 ---GRIPS-----------------------QRYSPDEYDL--------LAQGGEPENYQ 90
+PS SPD + ++ EP +Y+
Sbjct: 281 DYVHNVPSSTVSNSQPPQPHSLPLNALFTLKHYVSPDVFSFDSQSFIMNISHDCEPNSYE 340
Query: 91 EAMEDCKRNEWWKAMQDEMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQNNSQPRYK 150
EA D W KAM E +LH+N T+ L LP+ KK++ +WV+++K + + S RYK
Sbjct: 341 EASMDP---AWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVERYK 397
Query: 151 ARLVVKGFGQKKGVDFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFLHGDLEKE 210
ARLVVKG+ Q G+D+ E FSPVVKM+++R ++ AA I QLDV AFLHGDL +E
Sbjct: 398 ARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEE 457
Query: 211 IYMEQPEGF---------KLQKSLYGLKQAPRQWYKKFDSFMVNHGYEKTTSNHCVFVKR 261
+YM+ P G KL KSLYGLKQA RQWY+K + GYE + ++ +F K+
Sbjct: 458 VYMDIPPGLATPHKDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKK 517
Query: 262 FEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKMSRDRKQR 321
+ L +YVDD+L+ G D +I+ LK+ L F +KDLG L +++ K
Sbjct: 518 -RGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVL--YKDD 574
Query: 322 KLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIPYASAFG 381
+ +SQ K++ +L FN + P+ +PL + KL E + L + Y
Sbjct: 575 GILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKL-------RSHEGKVLDDPTYYRKLI 627
Query: 382 SLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLK 424
+ + T+ D+A+ V ++S+++ + + H +A +LRYLK
Sbjct: 628 GKLNFLTHTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLK 670
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 149/522 (28%), Positives = 242/522 (46%), Gaps = 103/522 (19%)
Query: 80 LAQGGEPENYQEAME-DCKRNEWWKAMQDEMESLHENRTYELVKLPQGKKALKNKWVFRL 138
L EP+ Y EA + +C W +AMQ E+ +L T++++ P K + +W++++
Sbjct: 286 LHAHNEPKTYTEANKFEC----WRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKI 341
Query: 139 KTEQNNSQPRYKARLVVKGFGQKKGVDFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLDV 198
K +++ RYKARLV KG+ Q +G+D+ + +SPV K ++IR+
Sbjct: 342 KHNADDTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRL----------------- 384
Query: 199 KTAFLHGDLEKEIYMEQPEGFKLQKSLYGLKQAPRQWYKKFDSFMVNHGYEKTTSNHCVF 258
A R+WY+K S +VNHGY++ +++H +F
Sbjct: 385 --------------------------------ASRKWYEKLASLLVNHGYKQASADHSLF 412
Query: 259 VKRFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKMSRDR 318
+K F LL+YVDD+++ G+ + +K L SF +KDLG K L ++++ +
Sbjct: 413 IKH-STTQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLGLEVAHSK 471
Query: 319 KQRKLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIP-YA 377
+ L Q KY +LS + ++KPV TP KL P +IP Y
Sbjct: 472 --LGISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSP-------LYTDIPAYR 522
Query: 378 SAFGSLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFG-DN 436
G L+Y + T+PDI +S+FLS + H NA +LRYLK L+F +
Sbjct: 523 RLVGRLLY-LNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSS 581
Query: 437 RPVLDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKAS 496
P + GY+DAD G D+R+ SG + ISW++K Q V+ SS EAEY A+ A
Sbjct: 582 LPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRALGAA- 640
Query: 497 KELLWMKKFLQELGVEQEKYILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDALEMKL 556
+ N FH R+KH+++ H +R+ L +
Sbjct: 641 --------------------------------TSNPVFHERTKHLEIDCHIVREKLAAGI 668
Query: 557 FQIEMVHTDDNGADMMTKAL---PTEKLVTCRKIADMANVPT 595
++ + + + AD TK++ P L+ + D+ PT
Sbjct: 669 MKLLPISSKNQLADCFTKSILPQPFNSLLFKLGLVDIHKPPT 710
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 173/302 (57%), Gaps = 21/302 (6%)
Query: 105 MQDEMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQNNSQPRYKARLVVKGFGQKKGV 164
MQ E+ +L + T+++V LP K + +W+F++K + S RYKARLV KG+ Q +G+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 165 DFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFLHGDLEKEIYMEQPEGF----- 219
D+ + +SPV K++++R ++ LA+ + + Q DV AFLHG+L++++YM P G
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHSHQ 120
Query: 220 ----KLQKSLYGLKQAPRQWYKKFDSFMVNHGYEKTTSNHCVFVKRFEDGDFIILLLYVD 275
KL KSLYGL+QA +WY+K + +++ GY++ S+ +F+K F ILL+YVD
Sbjct: 121 DEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKH-THSSFTILLVYVD 179
Query: 276 DMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKMSRDRKQRKLWLSQEKYIEKIL 335
D+++ G + ++K L +F +KD+G K L ++++ + + L Q KY +L
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKS--GISLCQRKYCLDLL 237
Query: 336 SRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIP-YASAFGSLMYAMVCTKPDI 394
++ +KP+ TP KL PS +IP Y G L+Y + T+PDI
Sbjct: 238 EDSGLTGSKPMNTPSDPSIKLHNDSAPS-------FPDIPAYRRLIGRLLY-LNTTRPDI 289
Query: 395 AH 396
+
Sbjct: 290 TY 291
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 214/450 (47%), Gaps = 102/450 (22%)
Query: 108 EMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQNNSQPRYKARLVVKGFGQKKGVDFE 167
+++S +N+T+EL+KL GKKA+ KWVF+LK ++KARLV + F +K+G D+
Sbjct: 203 KLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGFDYT 262
Query: 168 EIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFLHGDLEKEIYMEQPEGFKLQKSLYG 227
E+ FKL K+LYG
Sbjct: 263 EVV------------------------------------------------FKLNKALYG 274
Query: 228 LKQAPRQWYKKFDSFMVNHGYEKTTSNHCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKI 287
LKQAPR W K+ + F V G++K + H V+VK E +I+ L
Sbjct: 275 LKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVKGSEGTSLLIICL--------------- 319
Query: 288 ESLKKELGKSFAMKDLGSAKQILRMKMSRDRKQRKLWLSQEKYIEKILSRFNMSNAKPVX 347
+ILR + L L+Q KY +I +FNM +
Sbjct: 320 --------------------EILRT-------TKGLILNQTKYDTEIQKKFNMLD----- 347
Query: 348 TPLASHFKLSLSQCPSSEKEKEELKNIPYASAFGSLMYAMVCTKPDIAHAVGVVSRFLSN 407
S L+ + + KE+++ + L+ + ++ DI+++VG+VS+F+SN
Sbjct: 348 --FNSSITLAYANNINEVKEEDKGVDPTILRRLIGLLRYLCQSRLDISYSVGIVSKFMSN 405
Query: 408 LGKEHXNAVKWILRYLKGTSKICLYFGDNRPV----LDGYTDADMGGDVDSRKLTSGYLM 463
K H A K I+RY+ GT + + F + + + Y+DAD D R+ T+ +L
Sbjct: 406 PLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLF 465
Query: 464 TFARAAISWQSKLQKCVALSSIEAEYIAITKASKELLWMKKFLQELGVEQEKYI-LLCDS 522
A ISW SK Q VALSS E EY+ + A+ + W++ L++ ++ ++ I LL D+
Sbjct: 466 MLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQPIKLLIDN 525
Query: 523 QSAVHLSKNSTFHLRSKHIDVRYHWIRDAL 552
+ A++L+KN H +SKHI+ ++H++RD +
Sbjct: 526 KYAINLAKNHISHGKSKHIETKFHYLRDQV 555
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 159/309 (51%), Gaps = 25/309 (8%)
Query: 270 LLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKMSRDRKQRKLWLSQEK 329
+L+YVDD++I G+D I + K+ L + F MKDLG K L ++++R L++ Q K
Sbjct: 3 VLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARG--ANGLFMCQRK 60
Query: 330 YIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIPYASAFGSLMYAMVC 389
Y IL M + KP P+ + KL L + P+ Y L+Y +
Sbjct: 61 YTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSR------YRRLISRLIYLTI- 113
Query: 390 TKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFG-DNRPVLDGYTDADM 448
P+I ++V +++ +LRYLK + + +N L Y D+D
Sbjct: 114 MHPEITYSVHILTM--------------RVLRYLKSSPGQGIILPKENDLQLVAYCDSDW 159
Query: 449 GGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKELLWMKKFLQE 508
+R+ TSGYLM A ISW++K Q V+ SS EAEY A+ +A E++W++ L
Sbjct: 160 ASCPLTRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSS 219
Query: 509 LGVEQEK-YILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDALEMKLFQIEMVHTDDN 567
L V + +LLCD+Q+A+HL+ N +H R+KHI+V H+IR L+ V T
Sbjct: 220 LQVHYDSPTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQ 279
Query: 568 GADMMTKAL 576
AD+ TKAL
Sbjct: 280 QADIFTKAL 288
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 143/267 (53%), Gaps = 13/267 (4%)
Query: 261 RFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKMSRDRKQ 320
+ D F ILL+YVDD+++ G+ + + +K L SF +KDLG K +L ++++ ++
Sbjct: 4 KHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHSKQ- 62
Query: 321 RKLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIP-YASA 379
+ L Q KY +LS N+KPV T + KL P E +IP Y
Sbjct: 63 -GISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYE-------DIPSYRRL 114
Query: 380 FGSLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFGDNRPV 439
G L+Y + T+PDI +S+FLS + H NA +L+YLK L+F N +
Sbjct: 115 IGRLLY-LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSL 173
Query: 440 -LDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKE 498
L G++D D G VDSR+ SG + ISW++K Q V+ SS EAEY A+ A+ E
Sbjct: 174 HLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCE 233
Query: 499 LLWMKKFLQELGVEQEKY-ILLCDSQS 524
L W+ L++L ++ K +L CD+Q+
Sbjct: 234 LQWILYLLKDLNIQSSKLPVLFCDNQN 260
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 161/367 (43%), Gaps = 83/367 (22%)
Query: 197 DVKTAFLHGDLEKEIYMEQPEGF---------KLQKSLYGLKQAPRQWYKKFDSFMVNHG 247
D FLHGDL++++YM P+G KL KSLYGLKQA R+W++K S ++ G
Sbjct: 204 DANNTFLHGDLQEDVYMHPPQGVSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIG 263
Query: 248 YEKTTSNHCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAK 307
+ + +++H F+ R F LL+Y V H +K I
Sbjct: 264 FVQASADH-SFLIRASPTSFTALLIY------VAHSSKGIS------------------- 297
Query: 308 QILRMKMSRDRKQRKLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKE 367
L Q KY +LS ++ K V TPL L + P +
Sbjct: 298 -----------------LCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDDV 340
Query: 368 KEELKNIPYASAFGSLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTS 427
+ Y G L+Y + T+PDI+ A +S+F++ H +LRYL+
Sbjct: 341 ------LAYRCLIGCLLY-LTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCP 393
Query: 428 KICLYFGDNRPV-LDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIE 486
L+F + L G++DAD GG VDSR+ ++++Q + + +
Sbjct: 394 GRGLFFPRTSEMQLLGFSDADWGGCVDSRR------------SLAFQEAIHRFLFFLRSG 441
Query: 487 AEYIAITKASKELLWMKKFLQELGVEQEKYILLCDSQSAVHLSKNSTFHLRSKHIDVRYH 546
+I+ + ++ IL CD+QSA+H++ N F+ R+KH+D+ H
Sbjct: 442 ISCFSISHPRTPMAHIR-----------LSILYCDNQSALHIAANPVFYERTKHLDIDCH 490
Query: 547 WIRDALE 553
+R+ ++
Sbjct: 491 IVREKVQ 497
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 92/140 (65%), Gaps = 5/140 (3%)
Query: 85 EPENYQEAME-DCKRNEWWKAMQDEMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQN 143
EP++Y EA + +C W +AMQ E+ +L T++++ LP K + +W++++K +
Sbjct: 911 EPKSYTEANKFEC----WRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHAD 966
Query: 144 NSQPRYKARLVVKGFGQKKGVDFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFL 203
+ RYKARLV KG+ Q +G+D+ + +SPV K ++IR+VL LA+ N + QLDV AFL
Sbjct: 967 GTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFL 1026
Query: 204 HGDLEKEIYMEQPEGFKLQK 223
HGDL++++YM+ P G K
Sbjct: 1027 HGDLQEDVYMDIPPGVSTNK 1046
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 28/147 (19%)
Query: 105 MQDEMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQNNSQPRYKARLVVKGFGQKKGV 164
MQ E+ +L T++LV LP K + +W++++K + S RYKARLVVKG+ Q +G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 165 DFEEIFSPVVK----------------------------MSSIRVVLGLAASLNLEIEQL 196
D+ + +SPV K M+++R V+ LA+ I +L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 197 DVKTAFLHGDLEKEIYMEQPEGFKLQK 223
D +AFLHGDL++++YM P+G K
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGITTSK 147
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 122/255 (47%), Gaps = 48/255 (18%)
Query: 270 LLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQILRMKMSRDRKQRKLWLSQEK 329
+++YV DM++ G++ ++ L L +F++KDLG+ K L +++ + + L ++Q K
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEV-KPQSNGSLLITQSK 59
Query: 330 YIEKILSRFNMSNAKPVXTPLASHFKLSL-SQCPSSEKE--KEELKNIPYASAFGSLMYA 386
Y+ +L++ +M AK + +P+ S KLS P S+ + ++ + YA+ G
Sbjct: 60 YVRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP---- 115
Query: 387 MVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFGDNRPV------L 440
LSN +LR+LKGT L RP+ +
Sbjct: 116 ------------------LSN-----------VLRHLKGTLSWGLLV---RPIPTYPLSI 143
Query: 441 DGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKELL 500
Y DAD G D D R + + + ISW +K Q +A SS EAEY ++ A ELL
Sbjct: 144 LAYCDADWGSDPDDRSVDACVFL--GPNLISWWAKKQAVIARSSTEAEYSSLALAKSELL 201
Query: 501 WMKKFLQELGVEQEK 515
W+K + L V Q+K
Sbjct: 202 WIKTYGARLKVIQKK 216
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 221 LQKSLYGLKQAPRQWYKKFDSFMVNHGYEKTTSNHCVFVKRFEDGDFIILLLYVDDMLIV 280
L+KSLYGLKQA R WY K ++ +G++++ ++H +F + F+ +L+YVDD++I
Sbjct: 5 LRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYS-RESIFMAVLIYVDDLVIA 63
Query: 281 GHDAKKIESLKKELGKSFAMKDLGSAKQILRMKMSR 316
G+D I + K+ L + F MKDLG K L ++++R
Sbjct: 64 GNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELAR 99
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 19/161 (11%)
Query: 419 ILRYLKGTSKICLYFGDNRPV-LDGYTDADMG-GDVDSRKLTSGYLMTFARAAISWQSKL 476
+L YLKG L+F + + GYT+AD G D+R+ S + W
Sbjct: 3 VLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSIS------EQCFFCW---- 52
Query: 477 QKCVALSSIEAEYIAITKASKELLWMKKFLQELGVEQEKY-ILLCDSQSAVHLSKNSTFH 535
SS EAEY A+ A+ EL + L++L V K +L CD+QSA++++ N FH
Sbjct: 53 ------SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFH 106
Query: 536 LRSKHIDVRYHWIRDALEMKLFQIEMVHTDDNGADMMTKAL 576
+KH+++ H +R+ L+ LF++ + + D AD TK+L
Sbjct: 107 ECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSL 147
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 480 VALSSIEAEYIAITKASKELLWMKKFLQELGVE-QEKYILLCDSQSAVHLSKNSTFHLRS 538
V+ SS EAEY A+ E+ W+ LQ+ ++ +L CDSQSA H++ N++FH R+
Sbjct: 249 VSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHERT 308
Query: 539 KHIDVRYHWIRDALEMKLFQIEMVHTDDNGADMMTKAL 576
KHI++ H +R+ L+ KLF + V + AD++TK L
Sbjct: 309 KHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPL 346
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 47/73 (64%)
Query: 440 LDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKEL 499
L+GY+D+D GD R+ TSG L F AAISW +K Q ALSS EAEYIA T A+ +
Sbjct: 13 LEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGTFAACQA 72
Query: 500 LWMKKFLQELGVE 512
+W+ ++EL E
Sbjct: 73 IWLDNVIKELNCE 85
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 432 YFGDNRPVLDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIA 491
Y + RP + + + GD D +K T+ YL A ISW SK Q VALSS EA+Y+A
Sbjct: 49 YMCNKRPYI-AHGVGLVKGDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVA 107
Query: 492 ITKASKELLWMKKFLQELGV-EQEKYILLCDSQSAVHLSKNSTFH 535
+ A+ + LW++ L+EL E ++ LL D++ A+ L+ H
Sbjct: 108 TSYAACQALWIEMLLEELNAFEVDRIKLLVDNKLAIDLADRPISH 152
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 80 LAQGGEPENYQEAME-DCKRNEWWKAMQDEMESLHENRTYELVKLPQGKKALKNKWVFRL 138
L EP+ Y EA + +C W +AMQ E+ +L T++++ P K + +W++++
Sbjct: 379 LHAHNEPKTYTEANKFEC----WRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKI 434
Query: 139 KTEQNNSQPRYKARLVVKGFGQ 160
K + + RYKARLV KG+ Q
Sbjct: 435 KHHADGTIERYKARLVAKGYNQ 456
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 518 LLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDALEMKLFQIEMVHTDDNGADMMTKALP 577
L D++SA++L+KNS FH + KH++ R+H++RD + +E T D D+ TKAL
Sbjct: 14 LKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQLTDLFTKALK 73
Query: 578 TEKLVTCRKIADMAN 592
++ + R+ + N
Sbjct: 74 RDQFLKLRREIRVVN 88
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 213 MEQPEGF----------KLQKSLYGLKQAPRQWYKKFDSFMVNHGYEKTTSNHCVFVKRF 262
M QP GF KL+KSLYGLKQAP+ W++ F++ + ++ S+ +F+
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFI-YV 59
Query: 263 EDGDFIILLLYVDDM 277
+ F L+YVDD+
Sbjct: 60 KANTFAYFLVYVDDI 74
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 9/52 (17%)
Query: 196 LDVKTAFLHGDLEKEIYMEQPEGF---------KLQKSLYGLKQAPRQWYKK 238
+DV AFLHGDL++++YM+ P GF KL+KS Y LK AP+ W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSRLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 321 RKLWLSQEKYIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIPYASAF 380
+ L L Q Y +IL +FNM + T ++ + ++E E + +
Sbjct: 8 KGLILHQTDYASEILKKFNMLDCNSTITHADANIIYEV------KEEDEGVDPTMFRRLI 61
Query: 381 GSLMYAMVC-TKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYF----GD 435
GSL Y +C ++P I++ VG+VSRF+SN K + + K ILRY+ T + + F
Sbjct: 62 GSLRY--LCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQAT 119
Query: 436 NRPVLDGYTDAD 447
+ ++GY+DAD
Sbjct: 120 EQLDMEGYSDAD 131
>IMGA|Medtr8g081950.1 lectin receptor kinase, related
chr08_pseudomolecule_IMGAG_V3 16974207-16974491 H
EGN_Mt090430 20090702
Length = 94
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 250 KTTSNHCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKSFAMKDLGSAKQI 309
K S H ++V + + IIL LYV+D LI + I K +L K F M DLG
Sbjct: 8 KCDSEHGMYVIKDKSKGVIILYLYVNDFLITCSNGSYINEFKNDLMKEFEMVDLGHISYF 67
Query: 310 LRMKMSRDRKQRKLWLSQEKYIEKILSRF 338
LRM+ R + S+E Y +IL RF
Sbjct: 68 LRMEFQRTSRASN--SSKEIYASEILKRF 94
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 340 MSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIPYASAFGSLMYAMVCTKPDIAHAVG 399
M N P T + + L +E+ KE + + G L Y + T+PD+A ++G
Sbjct: 1 MGNCNPTLTQVVTSLSLI------NEQRKENVDFTQFRMLIGCLRY-LCNTRPDLALSIG 53
Query: 400 VVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFGDN 436
++S+F+ NLG H AVK +L Y+KG + + F +N
Sbjct: 54 LLSQFMQNLGVSHMIAVKRMLIYIKGKVEHAILFSNN 90
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 491 AITKASKELLWMKKFLQELGVEQEKYILL-CDSQSAVHLSKNSTFHLRSKHIDVRYHWIR 549
A+ +A+ E W+ FL + + I++ CD+ S++H+ N FH R+KHI++ H +R
Sbjct: 3 ALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVVR 62
Query: 550 DALE 553
D ++
Sbjct: 63 DKIK 66
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 53/93 (56%)
Query: 105 MQDEMESLHENRTYELVKLPQGKKALKNKWVFRLKTEQNNSQPRYKARLVVKGFGQKKGV 164
M +++ ++ + L L + K + KW +R+K + N + R+K L+VK + +++GV
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 165 DFEEIFSPVVKMSSIRVVLGLAASLNLEIEQLD 197
+ + FS V K++ + ++L + + ++QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93