Jatropha Genome Database

JcCB0615491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0615491.10 + phase: 0 /pseudo/partial
         (295 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g103760.1 PHD finger transcription factor, putative p...   122   2e-28
IMGA|Medtr4g103750.1 Immunoglobulin/major histocompatibility com...   112   2e-25
IMGA|Medtr4g073830.1 Zinc finger, FYVE/PHD-type chr04_pseudomole...    53   2e-07
IMGA|Medtr4g073860.1 Zinc finger, FYVE/PHD-type chr04_pseudomole...    52   4e-07

>IMGA|Medtr4g103760.1 PHD finger transcription factor, putative
           putative chr04_pseudomolecule_IMGAG_V3 22432805-22436698
           E EGN_Mt090430 20090702
          Length = 345

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 79/98 (80%)

Query: 164 LTLESNLHRLALSAEWLKYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSELDSNPS 223
           + LESNL   ALSA+WLK+VDS  TMGSA+HIV+  SR SSK+G+G+KRAR+S+++S+ S
Sbjct: 1   MQLESNLRHRALSADWLKHVDSVGTMGSATHIVVNLSRTSSKHGVGKKRARHSDIESSSS 60

Query: 224 LNSASGLGMLWWRGGRISRRLFSWKILPSSLVSKAARR 261
             +  GL M W RGGR+SR+LF+WK+LP S V+KAAR+
Sbjct: 61  SKTTGGLVMYWSRGGRLSRKLFNWKVLPRSFVAKAARQ 98


>IMGA|Medtr4g103750.1 Immunoglobulin/major histocompatibility complex;
            DDT; Zinc finger, FYVE/PHD-type
            chr04_pseudomolecule_IMGAG_V3 22426782-22432803 E
            EGN_Mt090430 20090702
          Length = 1274

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%)

Query: 2    YLNFYSFGHIASSVAEELMRKTSDKAIEDPIKSDEEIISAQMKIISKKTAKFRWPNIPRL 61
            Y+N+YS   + S VA+ELM K+ +K  ++   ++E++IS Q K I KK++ F WP+I  L
Sbjct: 1065 YINYYSLARVPSLVAQELMCKSPEKINKNIGLTEEDVISDQTKSIMKKSSNFCWPSIQNL 1124

Query: 62   NANVHKEKCGWCYCCRVSSDDLGCLFNVCLGPVQAGSVDEVVGLQSKRNKKADFTDLISY 121
            NA    EKCGWC+ C+V++D   CL+   + P+   S    V LQ ++ +      +I +
Sbjct: 1125 NAAAQMEKCGWCFSCKVANDGRDCLYISVVKPLNEVSKSTSVELQPRKIQNGHLRAIICH 1184

Query: 122  XXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIVSVKSLLL 164
                          PWLN H + LW + +L+  D +SVK +LL
Sbjct: 1185 IFSLEVRLRGLLLGPWLNLHQTNLWHEDLLKTFDFLSVKRVLL 1227


>IMGA|Medtr4g073830.1 Zinc finger, FYVE/PHD-type
           chr04_pseudomolecule_IMGAG_V3 14741287-14737210 E
           EGN_Mt090430 20090702
          Length = 806

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 15/120 (12%)

Query: 165 TLESNLHRLALSAEWLKYVDSAATMGSASHIVIASS--RASSKNGIGRKRA----RYSEL 218
           TLE N+  +A   +W+K  D         H+V  S+   A+S  G  +KRA    R  + 
Sbjct: 65  TLEENIRIVAFCGDWVKLTDD--------HLVEFSNIKSATSTQGTTQKRAPSGRRSKKR 116

Query: 219 DSNPSLNSASGLGMLWWRGGRISRRLFSWKILPSSLVSKAARRGLXSFFS-VFYMNSGRI 277
            S+           +WWRGGR SR +     +P S+V KAAR+G     S +FY +   I
Sbjct: 117 SSSDEATDDGSKESMWWRGGRFSRLISQNITVPKSMVRKAARQGGSRKISGIFYADDSEI 176


>IMGA|Medtr4g073860.1 Zinc finger, FYVE/PHD-type
           chr04_pseudomolecule_IMGAG_V3 14744887-14748258 E
           EGN_Mt090430 20090702
          Length = 897

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 2   YLNFYSFGHIASSVAEELMRKTSDKAIEDPIKSDEE--IISA----QMKIISKKTAKFRW 55
           Y+N+Y  G  ++S A +    +S+++  +   SD +   +SA    Q K  S+  ++F W
Sbjct: 720 YINYYMHGEFSASAAAKFASDSSEESKPEGHASDSQKKTLSAYTYLQAKSFSQVASRFFW 779

Query: 56  PNIPRLNANVHKEKCGWCYCCRVS-SDDLGCLFNVCLGPVQAGSVDEVVGLQSKRNKKAD 114
           P+  +   +V +E+CGWC  C+ +     GC+ N  L      ++  +  L   RN +  
Sbjct: 780 PSSEKKLVDVPRERCGWCLSCKANVVSKRGCMLNQSLIIATKSAMKTLAILPPLRNGEGI 839

Query: 115 FTDLI-SYXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIVSVKSLLLTL 166
               I +Y              P++N  Y + W + V +A+   ++K LLL +
Sbjct: 840 LPSTIATYILYMERCLHGLVVGPFVNASYRENWREQVKQATTFSAIKPLLLKM 892