Jatropha Genome Database

JcCB0611761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0611761.10 - phase: 0 /partial
         (81 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g045920.1 T24P13.2, putative chr05_pseudomolecule_IMG...   107   2e-24
IMGA|Medtr5g045920.2 T24P13.2, putative chr05_pseudomolecule_IMG...   107   2e-24

>IMGA|Medtr5g045920.1 T24P13.2, putative
           chr05_pseudomolecule_IMGAG_V3 19269297-19277776 E
           EGN_Mt090430 20090702
          Length = 310

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 60/77 (77%)

Query: 5   SGSQKVIGFDWSKKPGDPEISCDVDNFEDQTLLDSSSFVVVHGAGSFGHFQASKSGVHKG 64
           + SQK  G DWSK+PGD EI C+ + F D    + S F+VVHGAGSFGHFQASKSGVHKG
Sbjct: 36  ASSQKPPGMDWSKRPGDSEICCNPEEFGDDFDAECSRFIVVHGAGSFGHFQASKSGVHKG 95

Query: 65  GLDQPLVRAGFVATRIS 81
            L++PLV+ GFVATRIS
Sbjct: 96  QLNKPLVKGGFVATRIS 112


>IMGA|Medtr5g045920.2 T24P13.2, putative
           chr05_pseudomolecule_IMGAG_V3 19269297-19273193 E
           EGN_Mt090430 20090702
          Length = 204

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 60/77 (77%)

Query: 5   SGSQKVIGFDWSKKPGDPEISCDVDNFEDQTLLDSSSFVVVHGAGSFGHFQASKSGVHKG 64
           + SQK  G DWSK+PGD EI C+ + F D    + S F+VVHGAGSFGHFQASKSGVHKG
Sbjct: 36  ASSQKPPGMDWSKRPGDSEICCNPEEFGDDFDAECSRFIVVHGAGSFGHFQASKSGVHKG 95

Query: 65  GLDQPLVRAGFVATRIS 81
            L++PLV+ GFVATRIS
Sbjct: 96  QLNKPLVKGGFVATRIS 112