Jatropha Genome Database

JcCB0611681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0611681.10 - phase: 1 /pseudo/partial
         (125 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235757_42.1 WD40-like; AC235757.1 143728-153003 E EGN_Mt0...   140   2e-34
IMGA|AC235757_42.3 WD40-like; AC235757.1 143728-153003 E EGN_Mt0...   140   2e-34
IMGA|AC235757_42.2 WD40-like; AC235757.1 143728-153003 E EGN_Mt0...   140   2e-34
IMGA|Medtr2g121640.1 WD40-like chr02_pseudomolecule_IMGAG_V3 289...   134   2e-32
IMGA|Medtr1g059920.1 Serine/threonine protein phosphatase 2A 55 ...    85   1e-17

>IMGA|AC235757_42.1 WD40-like; AC235757.1 143728-153003 E
           EGN_Mt090430 20090702
          Length = 690

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 82/115 (71%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYLKSL+IEEKINKI+WCQTANGA+FLLSTNDKTI            ISDMN
Sbjct: 99  FQSHEPEFDYLKSLEIEEKINKIKWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMN 158

Query: 70  VDPSKALGNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLP 124
           +D SKA GNG           KP++ANGG  +KSYS  SNDF+FPPGG+PSL+LP
Sbjct: 159 IDSSKATGNGSIASSSNSSSSKPHLANGGPSDKSYSYLSNDFSFPPGGLPSLKLP 213


>IMGA|AC235757_42.3 WD40-like; AC235757.1 143728-153003 E
           EGN_Mt090430 20090702
          Length = 689

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 82/115 (71%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYLKSL+IEEKINKI+WCQTANGA+FLLSTNDKTI            ISDMN
Sbjct: 99  FQSHEPEFDYLKSLEIEEKINKIKWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMN 158

Query: 70  VDPSKALGNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLP 124
           +D SKA GNG           KP++ANGG  +KSYS  SNDF+FPPGG+PSL+LP
Sbjct: 159 IDSSKATGNGSIASSSNSSSSKPHLANGGPSDKSYSYLSNDFSFPPGGLPSLKLP 213


>IMGA|AC235757_42.2 WD40-like; AC235757.1 143728-153003 E
           EGN_Mt090430 20090702
          Length = 688

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 82/115 (71%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYLKSL+IEEKINKI+WCQTANGA+FLLSTNDKTI            ISDMN
Sbjct: 98  FQSHEPEFDYLKSLEIEEKINKIKWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMN 157

Query: 70  VDPSKALGNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLP 124
           +D SKA GNG           KP++ANGG  +KSYS  SNDF+FPPGG+PSL+LP
Sbjct: 158 IDSSKATGNGSIASSSNSSSSKPHLANGGPSDKSYSYLSNDFSFPPGGLPSLKLP 212


>IMGA|Medtr2g121640.1 WD40-like chr02_pseudomolecule_IMGAG_V3
           28903505-28910946 E EGN_Mt090430 20090702
          Length = 520

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 82/118 (69%), Gaps = 2/118 (1%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYLKSL+IEEKINKIRWCQ ANGALFLLSTNDKTI            +++MN
Sbjct: 100 FQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKVAEMN 159

Query: 70  VDPSKALGNGXXXXXXXXXXXKPYIANGGWP--EKSYSCPSNDFTFPPGGIPSLRLPV 125
           VDPSK +GNG           +P + NGG+P  ++SY+  S DF+FPPGGIPSLRLPV
Sbjct: 160 VDPSKTMGNGSIASSSNSSNPRPNLENGGYPDSDRSYNYLSPDFSFPPGGIPSLRLPV 217


>IMGA|Medtr1g059920.1 Serine/threonine protein phosphatase 2A 55 kDa
           regulatory subunit Bbeta isoform, putative
           chr01_pseudomolecule_IMGAG_V3 11800230-11798728 E
           EGN_Mt090430 20090702
          Length = 471

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  ++ ++DYL+SLKIEEKINK++WCQT NGALFLLSTNDKTI            I++MN
Sbjct: 82  FQSHIPEYDYLESLKIEEKINKLKWCQTTNGALFLLSTNDKTIKFWKVHEKKVKKIAEMN 141

Query: 70  VDPSKALG 77
           VD  K++G
Sbjct: 142 VDHYKSIG 149