Jatropha Genome Database

JcCB0607681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0607681.10 - phase: 0 /pseudo/partial
         (246 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g023870.1 hypothetical protein chr01_pseudomolecule_I...   143   1e-34

>IMGA|Medtr1g023870.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 5437009-5439642 E
           EGN_Mt090430 20090702
          Length = 321

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 93/127 (73%), Gaps = 6/127 (4%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFAMQRP-YLPIQHPYI 83
           QTIA+IAV+EG++QLGSFDKIAEDL+LV+N+QRKFSYLQ+IPG+ + QRP ++P QHP I
Sbjct: 160 QTIAVIAVKEGLVQLGSFDKIAEDLDLVLNIQRKFSYLQTIPGLLSFQRPQHIPFQHPCI 219

Query: 84  LKPNTRTIESEEIGFSVDDKRQITGVKRLFDESFDDSPLKSINLGLNSPQNGITGPPIWS 143
            KPN + +ES EI      K Q+T +  + DE  +   + +INLG N PQNG + PP+WS
Sbjct: 220 TKPNFQMMESNEI-----SKNQVTKLNNMQDERSNYFSMIAINLGRNHPQNGTSMPPLWS 274

Query: 144 IPPLLPT 150
            P  LP 
Sbjct: 275 PPLSLPN 281