Jatropha Genome Database

JcCB0603751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0603751.10 - phase: 0 /partial
         (141 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g125620.1 1-deoxy-D-xylulose 5-phosphate reductoisome...   271   6e-74

>IMGA|Medtr8g125620.1 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase; ; chr08_pseudomolecule_IMGAG_V3
           29353661-29358146 E EGN_Mt090430 20090702
          Length = 469

 Score =  271 bits (694), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 125/138 (90%), Positives = 135/138 (97%)

Query: 4   GLEVIEAHYLLGADYDNIEIVIHPQSIIHSMVETEDSSVLAQLGWPDMRLPILYTMSWPD 63
           GLEVIEAHYL GADYD+I+IVIHPQSIIHSM+ET+DSSVLAQLGWPDMRLPILYT+SWPD
Sbjct: 297 GLEVIEAHYLFGADYDDIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPD 356

Query: 64  RISCSEITWPRLDLCKQGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEM 123
           R+ CSE+TWPRLDLCK GSLTFKAPDN+KYPSM+LAYAAGRAGGTMTGVLSAANEKAVEM
Sbjct: 357 RVYCSEVTWPRLDLCKLGSLTFKAPDNIKYPSMNLAYAAGRAGGTMTGVLSAANEKAVEM 416

Query: 124 FIDEKISYLDIFKIVELT 141
           FIDEKISYLDIFK+VELT
Sbjct: 417 FIDEKISYLDIFKVVELT 434