Jatropha Genome Database
- JcCB0603701.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0603701.10 - phase: 0 /partial
(136 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g064920.1 Tetratricopeptide-like helical chr07_pseudo... 191 1e-49
IMGA|Medtr7g064980.1 Strong similarity to the beta-9 tubulin gen... 132 4e-32
IMGA|Medtr8g089440.1 male sterility MS5, putative putative chr0... 82 9e-17
IMGA|Medtr2g129970.1 Tetratricopeptide-like helical chr02_pseudo... 69 7e-13
>IMGA|Medtr7g064920.1 Tetratricopeptide-like helical
chr07_pseudomolecule_IMGAG_V3 13225956-13220702 E
EGN_Mt090430 20090702
Length = 300
Score = 191 bits (484), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 87/136 (63%), Positives = 111/136 (81%), Gaps = 3/136 (2%)
Query: 1 GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
GNLGWAYMQK N++ AEAVY+KAQMIDPD NKACNLGLCLI+QAR++EAQ ++ ++++G
Sbjct: 168 GNLGWAYMQKMNYVMAEAVYRKAQMIDPDCNKACNLGLCLIRQARYEEAQLIIDDILKGE 227
Query: 61 YPGSEDIKSIKRAQELLREVETKMPSPELTGILGFNLDDHDFVKGLEEMMEEWAPARSKR 120
PGS+DIKS KRAQ+LL E+ + +P+P IL D +F+KG+E++M EW P RSKR
Sbjct: 228 LPGSDDIKSKKRAQDLLEELRSLLPTPCPLDILVM---DDEFIKGIEQLMNEWGPVRSKR 284
Query: 121 LPIFEQISSFRDQLAC 136
LPIFE+ISS RDQLAC
Sbjct: 285 LPIFEEISSCRDQLAC 300
>IMGA|Medtr7g064980.1 Strong similarity to the beta-9 tubulin gene
gb|AF060248., related chr07_pseudomolecule_IMGAG_V3
13259028-13258538 E EGN_Mt090430 20090702
Length = 119
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 91/121 (75%), Gaps = 3/121 (2%)
Query: 16 AEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGRYPGSEDIKSIKRAQE 75
AE V++KAQMID DANKA NL LCL++Q+R++EA +L+ V++G+ PGS++IKS RA+E
Sbjct: 2 AEVVFKKAQMIDADANKALNLALCLMRQSRYEEAYLILEQVLQGKLPGSDEIKSRNRAEE 61
Query: 76 LLREVETKMPSPELTGILGFNLDDHDFVKGLEEMMEEWAPARSKRLPIFEQISSFRDQLA 135
LL E+ +P P+ + D D +KG++ ++ W+P RS+RLPIFE+ISSFRDQLA
Sbjct: 62 LLVELSANLPQPKF---MDDLGLDDDLLKGIDGLLNVWSPTRSRRLPIFEEISSFRDQLA 118
Query: 136 C 136
C
Sbjct: 119 C 119
>IMGA|Medtr8g089440.1 male sterility MS5, putative putative
chr08_pseudomolecule_IMGAG_V3 19225805-19223364 E
EGN_Mt090430 20090702
Length = 479
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 1 GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQN----V 56
GNLGWA MQ++N++ AE Y++A + PD NK CNLG+CL+KQ R EA+ L V
Sbjct: 180 GNLGWALMQQNNYIEAEEAYRRALCLAPDNNKMCNLGICLMKQGRIAEAKETLHRVKPAV 239
Query: 57 MEGRYPGSEDIKSIKRAQELLREVETKM 84
+G +K+ +RAQ++L+++E++M
Sbjct: 240 TDGPRGSDSHLKAYERAQQMLKDLESEM 267
>IMGA|Medtr2g129970.1 Tetratricopeptide-like helical
chr02_pseudomolecule_IMGAG_V3 31567281-31568975 H
EGN_Mt090430 20090702
Length = 292
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 1 GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQ---NVM 57
GN+ WAY+QK ++ AE Y+KA + D NK CNL +CL++ + EA+ +LQ V
Sbjct: 172 GNMAWAYLQKGDYKTAEEHYRKALSFEVDRNKQCNLAICLMQMKKITEARILLQAVTTVT 231
Query: 58 EGRYPGSEDIKSIKRAQELLREVET 82
+ R +KS +RA ++L+E+E+
Sbjct: 232 KNRKMDDSFVKSYERATQMLQEMES 256