Jatropha Genome Database

JcCB0600521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0600521.10 - phase: 0 /pseudo/partial
         (236 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g071140.2 Nitric oxide synthase, putative chr02_pseud...   282   1e-76
IMGA|Medtr2g071140.1 Nitric oxide synthase, putative chr02_pseud...   281   2e-76

>IMGA|Medtr2g071140.2 Nitric oxide synthase, putative
           chr02_pseudomolecule_IMGAG_V3 16287510-16281555 E
           EGN_Mt090430 20090702
          Length = 370

 Score =  282 bits (722), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 165/180 (91%), Gaps = 1/180 (0%)

Query: 37  VNMTVACCYGCGAPLQTLDQEAPGYVLPETYELKKRHRQLRTVLCGRCKLLSHGHMITAV 96
            +++VA CYGCGAPLQT D +APG+V  ETYELKK+H QL+TVLCGRC+LLSHG MITAV
Sbjct: 85  ASISVASCYGCGAPLQTSDNDAPGFVHSETYELKKKHHQLKTVLCGRCQLLSHGEMITAV 144

Query: 97  GGNGGYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLAGANPIIL 156
           GG+GGY GGKQF++A++LR+KLSHLR  KALIVKLVD+VDFNGSFL+RVRDLAGANPII+
Sbjct: 145 GGHGGYSGGKQFITAEDLRQKLSHLRDAKALIVKLVDVVDFNGSFLSRVRDLAGANPIIM 204

Query: 157 VITKVIDLLPKETDLNCVGDWVVEATTKKKLNVLSVHLTSSKSLVGIAGVISEIQKEKKG 216
           V+TKV DLLP++TD NCVGDWVVEA T+KKLNVLSVHLTSSKSLVGI GVISEIQKEKKG
Sbjct: 205 VVTKV-DLLPRDTDFNCVGDWVVEAITRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKG 263


>IMGA|Medtr2g071140.1 Nitric oxide synthase, putative
           chr02_pseudomolecule_IMGAG_V3 16287510-16279895 E
           EGN_Mt090430 20090702
          Length = 547

 Score =  281 bits (719), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 165/180 (91%), Gaps = 1/180 (0%)

Query: 37  VNMTVACCYGCGAPLQTLDQEAPGYVLPETYELKKRHRQLRTVLCGRCKLLSHGHMITAV 96
            +++VA CYGCGAPLQT D +APG+V  ETYELKK+H QL+TVLCGRC+LLSHG MITAV
Sbjct: 85  ASISVASCYGCGAPLQTSDNDAPGFVHSETYELKKKHHQLKTVLCGRCQLLSHGEMITAV 144

Query: 97  GGNGGYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLAGANPIIL 156
           GG+GGY GGKQF++A++LR+KLSHLR  KALIVKLVD+VDFNGSFL+RVRDLAGANPII+
Sbjct: 145 GGHGGYSGGKQFITAEDLRQKLSHLRDAKALIVKLVDVVDFNGSFLSRVRDLAGANPIIM 204

Query: 157 VITKVIDLLPKETDLNCVGDWVVEATTKKKLNVLSVHLTSSKSLVGIAGVISEIQKEKKG 216
           V+TKV DLLP++TD NCVGDWVVEA T+KKLNVLSVHLTSSKSLVGI GVISEIQKEKKG
Sbjct: 205 VVTKV-DLLPRDTDFNCVGDWVVEAITRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKG 263