Jatropha Genome Database

JcCB0599321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0599321.10 + phase: 0 /partial
         (108 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g096460.1 Start codon is not identified Stop codon is...   110   2e-25

>IMGA|Medtr4g096460.1 Start codon is not identified Stop codon is
           not identified, putative chr04_pseudomolecule_IMGAG_V3
           20308460-20311936 E EGN_Mt090430 20090702
          Length = 442

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 3/105 (2%)

Query: 2   IDRPNEARAMYEKLQSHSSPKVSKKARQFMFSFQAMEMMKV-TGSNFSPKSTGYRKYFEK 60
           + R NEAR+MYEKLQSH S KV KKAR FM+SFQAMEMMKV T S+   K+T Y+ YF+ 
Sbjct: 337 LSRHNEARSMYEKLQSHPSVKVGKKARHFMYSFQAMEMMKVRTRSSRYSKNTFYQSYFDA 396

Query: 61  FIDDNVTNYLV-EEAESRGALSEALPYMVFLVSPIFIVLFIAVQR 104
           FI +N +NY V +E      L++ L Y+VFL+SPIF+VL +AVQ+
Sbjct: 397 FI-ENKSNYPVKDEVAQESDLNQVLLYIVFLISPIFVVLLLAVQK 440