Jatropha Genome Database

JcCB0597261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.10 - phase: 0 /partial
         (180 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g087990.1 hypothetical protein chr05_pseudomolecule_I...   151   1e-37

>IMGA|Medtr5g087990.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 34074315-34072318 E
           EGN_Mt090430 20090702
          Length = 621

 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 7/153 (4%)

Query: 28  KPQLLFTPSLSHQNASFRRETRAFAGRSK-----NKQGPRIDLDPGYLXXXXXXXXXXXX 82
           KP+  F     + +   RR+   +AGRSK     +  G R++ +  +             
Sbjct: 55  KPESEFGIFSKNCDVFSRRDVGCYAGRSKKTGGASSSGGRLEGNADFRRRMKRNARVKSK 114

Query: 83  XLSESLFYRIKNPHK--IHADNFTEEELNLIGLGYDRMVRFMEKDDPNLKHPYDWYKYGE 140
            L+ESLFYR+KNP     + DNF+E+ L  IGLGYDRMVRFMEKDDPNL+HPYDWYKYGE
Sbjct: 115 KLAESLFYRLKNPRGRGNYPDNFSEDLLQQIGLGYDRMVRFMEKDDPNLRHPYDWYKYGE 174

Query: 141 FGPYSWRGVVLGDPIAGRFTDERVTLYSEVKDQ 173
           +GPYSWRG+V+G+P++G  TDE VT+ +EVKD 
Sbjct: 175 YGPYSWRGIVVGEPVSGGITDECVTIINEVKDH 207