Jatropha Genome Database

JcCB0590911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590911.10 - phase: 0 /partial
         (60 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g097010.1 Zinc finger, RING-type; Site-specific recom...   114   1e-26

>IMGA|Medtr7g097010.1 Zinc finger, RING-type; Site-specific
           recombinase chr07_pseudomolecule_IMGAG_V3
           21862208-21856174 E EGN_Mt090430 20090702
          Length = 744

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 55/60 (91%)

Query: 1   AVDGQHLILHPLNMKCLLHHYGSYDMLPQRINGTILQLETVTQSEAMRRRYRYLSHFSLT 60
           AVDGQHLILHPLN KCLLHHYGSYD LP RI+G ILQLETVTQSEAMRRRYR+LSHF LT
Sbjct: 498 AVDGQHLILHPLNTKCLLHHYGSYDKLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLT 557