Jatropha Genome Database

JcCB0590711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590711.10 + phase: 0 /partial
         (256 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g043930.1 Cyclin-like chr08_pseudomolecule_IMGAG_V3 9...   397   e-111

>IMGA|Medtr8g043930.1 Cyclin-like chr08_pseudomolecule_IMGAG_V3
           9647497-9639961 E EGN_Mt090430 20090702
          Length = 1025

 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/238 (80%), Positives = 209/238 (87%), Gaps = 8/238 (3%)

Query: 1   INKLAAVRINGMVERLQQSQQHIRENVYHLFQQILSQRTSLFFNRHIDQIILCCFYGVAK 60
           I KL AVRI+GMVERLQ SQQ IRENVY LFQ+IL+Q TSLFFNRHIDQIILCCFYGVAK
Sbjct: 746 IVKLGAVRISGMVERLQLSQQ-IRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAK 804

Query: 61  ISKVNLTFREIIFNYRKQPQCKPQVFRSVFIDWSSARHNG----RTGQDHVDIITFYNEI 116
           IS++NLTFREII+NYRKQPQCKPQVFRSVF+DWSSAR NG    RTGQ+H+DII+FYNE+
Sbjct: 805 ISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGGSRHRTGQEHIDIISFYNEV 864

Query: 117 FIPAAKPLLVEVGSAGAITKASPTPEVNNNKDG---QCPASPKVSPFPSLPDMSPKKVSA 173
           FIP+ KPLLVE+G  GA  ++   PE NN  DG   Q P SP++SPFPSLPDMSPKKVSA
Sbjct: 865 FIPSVKPLLVELGPGGATVRSDQVPEANNKNDGHLVQNPGSPRISPFPSLPDMSPKKVSA 924

Query: 174 THNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRG 231
            HNVYVSPLR+SKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLN NRKVRG
Sbjct: 925 AHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKVRG 982