Jatropha Genome Database

JcCB0590701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590701.10 - phase: 0 /pseudo
         (104 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g039000.1 Importin alpha-like protein, beta-binding r...   104   1e-23
IMGA|Medtr7g138170.1 Armadillo chr07_pseudomolecule_IMGAG_V3 327...    99   7e-22
IMGA|Medtr1g100320.1 Importin alpha-like protein, beta-binding r...    94   1e-20
IMGA|Medtr8g138280.1 Myb, DNA-binding; Importin alpha-like prote...    91   2e-19

>IMGA|Medtr2g039000.1 Importin alpha-like protein, beta-binding
          region chr02_pseudomolecule_IMGAG_V3 11033049-11037195
          E EGN_Mt090430 20090702
          Length = 566

 Score =  104 bits (260), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/53 (90%), Positives = 52/53 (98%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL 53
          MSLRP+ARTEVRRN+YKVAVDADEGRRRREDNMVEIRK+KREE+L KKRREGL
Sbjct: 1  MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGL 53


>IMGA|Medtr7g138170.1 Armadillo chr07_pseudomolecule_IMGAG_V3
          32721508-32726545 E EGN_Mt090430 20090702
          Length = 563

 Score = 98.6 bits (244), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 52/55 (94%), Gaps = 2/55 (3%)

Query: 1  MSLRPSA--RTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL 53
          MS RP+A  RTEVRRN+YKVAVDA+EGRRRREDN+VEIRKN+REE+LQKKRREGL
Sbjct: 1  MSYRPNANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGL 55


>IMGA|Medtr1g100320.1 Importin alpha-like protein, beta-binding
          region chr01_pseudomolecule_IMGAG_V3 20775091-20769902
          E EGN_Mt090430 20090702
          Length = 533

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/55 (81%), Positives = 50/55 (90%), Gaps = 2/55 (3%)

Query: 1  MSLRPSA--RTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL 53
          MS RP+A  RTEVRRN+YKVAVDA+EGRRRRED MVEIRKN+REE+L KKRREGL
Sbjct: 1  MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGL 55


>IMGA|Medtr8g138280.1 Myb, DNA-binding; Importin alpha-like
          protein, beta-binding region
          chr08_pseudomolecule_IMGAG_V3 33283183-33288014 E
          EGN_Mt090430 20090702
          Length = 602

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 49/64 (76%)

Query: 4  RPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGLXXXXXXXXXL 63
          +P ++ + RRN+YKVAVDA++GRRRREDNMVEIRKNKREE+LQKKRREGL          
Sbjct: 12 KPDSKADARRNRYKVAVDAEDGRRRREDNMVEIRKNKREESLQKKRREGLQNQQQLPVTF 71

Query: 64 TSSF 67
           S F
Sbjct: 72 DSKF 75