Jatropha Genome Database

JcCB0588921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0588921.10 - phase: 0 /pseudo/partial
         (179 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g119840.1 hypothetical protein chr08_pseudomolecule_I...   116   7e-27

>IMGA|Medtr8g119840.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 27274651-27280812 E
           EGN_Mt090430 20090702
          Length = 660

 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 66  RLQQNWKVKRQRVAAIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAID 125
           RLQQNWKVKRQR  ++ PGNEGFT DLFDNS YD  ++ R +S+ST+R++HD+AGMLAI+
Sbjct: 164 RLQQNWKVKRQRQTSLVPGNEGFTFDLFDNS-YDQGAIVRSSSMSTVRVNHDAAGMLAIN 222

Query: 126 LPPKSCRSLHFGFLGVHSNEDVXXXXXXXXXXXVEHPSKETEKESASDNESIKE 179
           + P+ C SL FGF+    ++              E    ET  ES+SD E +K+
Sbjct: 223 VSPELCHSLQFGFVSAQPDDMQKKSNENQSHLLGEDCLGETGIESSSDEECVKK 276