Jatropha Genome Database

JcCB0587121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0587121.10 - phase: 2 /pseudo/partial
         (259 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g132520.1 TCP transcription factor chr02_pseudomolecu...    69   3e-12
IMGA|AC233675_3.1 TCP transcription factor AC233675.1 11574-1264...    68   4e-12
IMGA|Medtr4g109380.1 TCP transcription factor chr04_pseudomolecu...    68   4e-12
IMGA|Medtr3g036490.1 TCP transcription factor chr03_pseudomolecu...    52   2e-07

>IMGA|Medtr2g132520.1 TCP transcription factor
          chr02_pseudomolecule_IMGAG_V3 32076074-32073489 E
          EGN_Mt090430 20090702
          Length = 329

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 40/49 (81%)

Query: 1  AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKL 49
          A+GPRDRR+RLS   A +F+D+QD+L +D+ SK V+WL+ +A+SAI KL
Sbjct: 34 AKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKL 82


>IMGA|AC233675_3.1 TCP transcription factor AC233675.1 11574-12645
          E EGN_Mt090430 20090702
          Length = 335

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 41/50 (82%)

Query: 1  AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLS 50
          ++GPRDRR+RLS   A EF+D+QD+L +D+ SK V+WL+ +A+S+I KL+
Sbjct: 32 SKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLA 81


>IMGA|Medtr4g109380.1 TCP transcription factor
          chr04_pseudomolecule_IMGAG_V3 24475212-24474141 E
          EGN_Mt090430 20090702
          Length = 335

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 41/50 (82%)

Query: 1  AQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLS 50
          ++GPRDRR+RLS   A EF+D+QD+L +D+ SK V+WL+ +A+S+I KL+
Sbjct: 32 SKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLA 81


>IMGA|Medtr3g036490.1 TCP transcription factor
           chr03_pseudomolecule_IMGAG_V3 9665599-9664445 H
           EGN_Mt090430 20090702
          Length = 384

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 2   QGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLDQARSAIKKLSSGGIP 55
           +G RDRR+RLS+  A + +DLQDKL   + SK ++WLL+  +  I KL     P
Sbjct: 67  RGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKLDIDKLPPLQFP 120