Jatropha Genome Database

JcCB0585631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0585631.10 + phase: 2 /TE/partial
         (322 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g007080.1 Helicase, C-terminal; ; chr02_pseudomolecul...   176   1e-44
IMGA|Medtr7g133130.1 Helicase, C-terminal; ; chr07_pseudomolecul...    67   1e-11
IMGA|Medtr2g121440.1 Helicase, C-terminal; ; chr02_pseudomolecul...    48   7e-06

>IMGA|Medtr2g007080.1 Helicase, C-terminal; ;
           chr02_pseudomolecule_IMGAG_V3 957151-962448 E
           EGN_Mt090430 20090702
          Length = 1118

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/148 (63%), Positives = 104/148 (70%), Gaps = 1/148 (0%)

Query: 175 FMNSMVLPEVEKLNNATITQSFDGXXXXXXXXXXXXRINGDQLKKSSTKSLGRIIPGEDS 234
           FMNSMVLPEVEKLNNA  +   D               NG Q +K S KS+GRIIPGE+S
Sbjct: 358 FMNSMVLPEVEKLNNAVNSAPPDKASDLNPKDKGAESRNGGQSRKGSNKSIGRIIPGEES 417

Query: 235 DSEFVXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISR 294
           DS++                 FMKRVKKTKAEKLS+VDHSKIDY PFRKNFYIEVKE+S+
Sbjct: 418 DSDYADPEVEGDPLDEDDDE-FMKRVKKTKAEKLSIVDHSKIDYIPFRKNFYIEVKEVSK 476

Query: 295 MTPEEVAAYRKQLELKIHGKDVPKPVKT 322
           MT EEVA YRKQLELKIHGKDVPKPVK+
Sbjct: 477 MTVEEVAFYRKQLELKIHGKDVPKPVKS 504


>IMGA|Medtr7g133130.1 Helicase, C-terminal; ;
           chr07_pseudomolecule_IMGAG_V3 31059613-31064047 E
           EGN_Mt090430 20090702
          Length = 775

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 45/63 (71%)

Query: 260 VKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKP 319
           + K K E ++ +DH++IDY+PF K+FY E   IS M+ ++V  YRK L +++ G +VPKP
Sbjct: 170 LDKKKIEPIAPLDHNEIDYEPFNKDFYEESPSISGMSEQDVIDYRKSLAIRVSGFEVPKP 229

Query: 320 VKT 322
           VKT
Sbjct: 230 VKT 232


>IMGA|Medtr2g121440.1 Helicase, C-terminal; ;
           chr02_pseudomolecule_IMGAG_V3 28818819-28824967 E
           EGN_Mt090430 20090702
          Length = 499

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 27/42 (64%)

Query: 281 FRKNFYIEVKEISRMTPEEVAAYRKQLELKIHGKDVPKPVKT 322
           F KNFY E   +  MT  EV  YR + E+ + GKDVPKPVK+
Sbjct: 55  FEKNFYSESPSVRAMTEAEVTEYRLRREITVEGKDVPKPVKS 96