Jatropha Genome Database

JcCB0584071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0584071.10 - phase: 1 /pseudo/partial
         (304 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g079070.1 Zinc finger, C2H2-type chr01_pseudomolecule...    52   3e-07
IMGA|Medtr8g018830.1 Zinc finger, C2H2-type chr08_pseudomolecule...    49   3e-06
IMGA|Medtr7g121290.1 Zinc finger, C2H2-type chr07_pseudomolecule...    48   5e-06

>IMGA|Medtr1g079070.1 Zinc finger, C2H2-type
           chr01_pseudomolecule_IMGAG_V3 15759586-15762413 E
           EGN_Mt090430 20090702
          Length = 569

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 109/254 (42%), Gaps = 77/254 (30%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSINSLAASTNFNYHLMGAPIGPNNMAQH------ 82
           R+DSFITHRAFCDALAEE+ARV + T+ N      NF      A + P++ +QH      
Sbjct: 181 RKDSFITHRAFCDALAEESARVTSVTTTN-----LNFKNEEGSAMMNPHSHSQHGLSHGI 235

Query: 83  ----------------FSSI-FKPISSSNDQQTIDQTRRGLPLWVSQG----PQGHEAII 121
                           F  + F  I + N    ++Q R  L LW++QG     Q   ++ 
Sbjct: 236 LQNIGGIPHPQFGSHGFHHVDFNGIGNKNTM-IMEQQRPSLSLWLNQGNHEMGQSSNSLF 294

Query: 122 NNS-IQEIHRQLGSLTSSGTIFGQDPLVSSSDQYHQINWPKIFGNNKQISSNNVHQEELT 180
            +S + EI  Q+G+  ++      + L+ SS          +FG     +SN+     L+
Sbjct: 295 GSSGLSEI-VQMGNAATNNNN--NNALICSSSS-------SMFG---IPASNSTSAANLS 341

Query: 181 STTSLPLNEAAVQLASVPSLYSGXXXXXXXXXXXXXXXXXXXXLLQKAAQIGATSTDPS- 239
              S P +  +V +++ P                         LLQKAAQ+G+T ++ S 
Sbjct: 342 --LSKPASSGSVTVSATP--------------------MSATALLQKAAQMGSTRSNTSN 379

Query: 240 -------FLGSFGL 246
                  F  SFG+
Sbjct: 380 DNNNPSIFSSSFGV 393


>IMGA|Medtr8g018830.1 Zinc finger, C2H2-type
           chr08_pseudomolecule_IMGAG_V3 3503403-3500493 E
           EGN_Mt090430 20090702
          Length = 517

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 21/22 (95%)

Query: 29  RRDSFITHRAFCDALAEETARV 50
           RRDSFITHRAFCDALAEE+AR 
Sbjct: 204 RRDSFITHRAFCDALAEESARA 225


>IMGA|Medtr7g121290.1 Zinc finger, C2H2-type
           chr07_pseudomolecule_IMGAG_V3 28520698-28522529 E
           EGN_Mt090430 20090702
          Length = 406

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 26/29 (89%)

Query: 29  RRDSFITHRAFCDALAEETARVNAATSIN 57
           R+DSFITHRAFCDALA E+AR ++ T++N
Sbjct: 176 RKDSFITHRAFCDALAVESARHSSPTTLN 204