Jatropha Genome Database

JcCB0582451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0582451.10 + phase: 1 /partial
         (229 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g025790.1 Prenyltransferase/squalene oxidase chr07_ps...    74   6e-14
IMGA|Medtr4g133540.1 Prenyltransferase/squalene oxidase chr04_ps...    57   8e-09

>IMGA|Medtr7g025790.1 Prenyltransferase/squalene oxidase
           chr07_pseudomolecule_IMGAG_V3 6436164-6430522 E
           EGN_Mt090430 20090702
          Length = 355

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 63/185 (34%)

Query: 14  PGSEAHVGYTFCGLAAMVLI-----------NEVNRLDMARLIDWVVFRQGVECGFQGRT 62
           PG+E+H G T+C +A++ L+           N  + +D+  L+DW++ RQG + GFQGR 
Sbjct: 207 PGAESHGGATYCAIASLRLMGYVEDNVLSSCNLSSLIDLPLLLDWILQRQGTDGGFQGRP 266

Query: 63  NKLVDGCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADE 122
           NK  D CY+FW GGV  IL         G  F D +                        
Sbjct: 267 NKSTDTCYAFWIGGVLRILG--------GCNFVDNK------------------------ 294

Query: 123 PDHFKQGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHTCYCLSGLSVCQ 182
                              AL+ ++L C Q + GGF   PG   D YH+ Y  +  S+ +
Sbjct: 295 -------------------ALRGFLLSC-QYKYGGFSKFPGDFPDLYHSYYGFAAFSLLE 334

Query: 183 YSWSK 187
            S  K
Sbjct: 335 ESGLK 339


>IMGA|Medtr4g133540.1 Prenyltransferase/squalene oxidase
           chr04_pseudomolecule_IMGAG_V3 32014094-32024511 E
           EGN_Mt090430 20090702
          Length = 283

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 58/164 (35%), Gaps = 51/164 (31%)

Query: 8   GSIAGEPGSEAHVGYTFCGLAAMVLINEVNRLDMARLIDWVVFRQGVECGFQGRTNKLVD 67
           G     PG E+H G  FC + A+ +   ++ +D   L  W+  RQ    G  GR  KL D
Sbjct: 165 GGFGCTPGGESHAGQIFCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224

Query: 68  GCYSFWQGGVFAILQRLRSVSGEGVAFSDAEAGDYATDSTSEGEVTNGNSSEADEPDHFK 127
            CYS+W      ++ R+  +S E                                     
Sbjct: 225 VCYSWWVLSSLIMIDRVHWISKE------------------------------------- 247

Query: 128 QGDHGEMVPPFHSMALQQYILLCSQEQDGGFRDKPGKARDFYHT 171
                          L ++IL C   ++GG  D+P  A D YHT
Sbjct: 248 --------------KLIKFILDCQDTENGGISDRPDDAVDVYHT 277