Jatropha Genome Database

JcCB0580221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580221.10 + phase: 0 
         (199 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g037800.1 hypothetical protein chr02_pseudomolecule_I...    85   2e-17
IMGA|Medtr1g106390.1 hypothetical protein chr01_pseudomolecule_I...    64   4e-11

>IMGA|Medtr2g037800.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 10437713-10435949 E
           EGN_Mt090430 20090702
          Length = 224

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 86/180 (47%), Gaps = 27/180 (15%)

Query: 1   MDYKDG---DFDVDLENGLRVNAEDPHKDYISVVKIQAKELLGKIYGVFVDGTINDEEGL 57
           MD + G   D +VDLE+GL +  ++  +  I             I G FV G++N E   
Sbjct: 1   MDQRSGREKDIEVDLESGLPLIEDNSRRISI-------------ISGGFVGGSVNGEARP 47

Query: 58  NLCHNAPSSNGVSVEQVKLEGEKTVDHXXXXXXXXXXXXXXXXXXXXPPRPPTGPTLDAA 117
           +   N  + + VSV  +K+  +                         PPRPP GP+LDAA
Sbjct: 48  SSYLNESNLSEVSVNMMKVVNKAPAKEKRKKASGKKAAK--------PPRPPQGPSLDAA 99

Query: 118 DQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXXT---IAMVFTVLFCLVIVFQG 174
           D KLIKE++ELAMLKRA++ER                  +   +AMVFTV+F +VI+ QG
Sbjct: 100 DHKLIKEMSELAMLKRARIERMKALKKMRTAKSSTPSSNSSSIVAMVFTVIFFIVIICQG 159


>IMGA|Medtr1g106390.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 22183975-22177213 E
           EGN_Mt090430 20090702
          Length = 277

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 105 PPRPPTGPTLDAADQKLIKELTELAMLKRAKVERXXXXXXXXXXXXXXXXXXT--IAMVF 162
           PP PP GP+LDA D K +KEL ELA+ KRA++++                  T   AMV 
Sbjct: 134 PPLPPRGPSLDAGDHKFVKELAELALRKRARIKKMNAVKKMKASKLPSSSTYTNLSAMVI 193

Query: 163 TVLFCLVIVFQG 174
           T+ F LVI+F G
Sbjct: 194 TIFFFLVIIFHG 205