Jatropha Genome Database

JcCB0580021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580021.20 - phase: 1 /partial
         (67 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g109610.1 Acetohydroxy acid isomeroreductase; ; chr04...   131   9e-32

>IMGA|Medtr4g109610.1 Acetohydroxy acid isomeroreductase; ;
           chr04_pseudomolecule_IMGAG_V3 24593545-24589657 F
           EGN_Mt090430 20090702
          Length = 580

 Score =  131 bits (329), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 59/66 (89%), Positives = 64/66 (96%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDISVPPDADFVRP 60
           RFDYILTQQA VAVDNGAP+N+DLISNF+SDPVHGAIEVCA+LRPTLDISVP DADFVRP
Sbjct: 515 RFDYILTQQALVAVDNGAPINQDLISNFMSDPVHGAIEVCAELRPTLDISVPADADFVRP 574

Query: 61  ELRQSS 66
           ELRQS+
Sbjct: 575 ELRQSN 580