Jatropha Genome Database
- JcCB0580021.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0580021.10 + phase: 1 /partial
(112 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr3g013160.2 Nucleotide-binding, alpha-beta plait chr03_... 176 2e-45
IMGA|Medtr3g013160.1 Nucleotide-binding, alpha-beta plait chr03_... 176 2e-45
IMGA|Medtr4g032620.1 RNA-binding region RNP-1 (RNA recognition m... 159 4e-40
IMGA|Medtr4g032540.1 RNA-binding region RNP-1 (RNA recognition m... 158 6e-40
IMGA|Medtr2g014820.1 Nucleotide-binding, alpha-beta plait chr02_... 130 2e-31
IMGA|Medtr3g013160.3 Nucleotide-binding, alpha-beta plait chr03_... 69 5e-13
IMGA|Medtr4g115110.1 D111/G-patch; RNA-binding region RNP-1 (RNA... 54 2e-08
>IMGA|Medtr3g013160.2 Nucleotide-binding, alpha-beta plait
chr03_pseudomolecule_IMGAG_V3 2411504-2404739 E
EGN_Mt090430 20090702
Length = 624
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 99/114 (86%), Gaps = 2/114 (1%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
Q+LMLQP + TKV+CLT V+PDELKDDE+YE+IL+DMR E KFG LVNVVIPRP D
Sbjct: 511 QKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPD 570
Query: 59 SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYDG 112
E PGVGKVFLEYAD++G+TKAR+G+NGRKFGGNQV+AV++PENKF QG+Y+G
Sbjct: 571 GELCPGVGKVFLEYADVDGSTKARSGLNGRKFGGNQVIAVFYPENKFAQGDYEG 624
>IMGA|Medtr3g013160.1 Nucleotide-binding, alpha-beta plait
chr03_pseudomolecule_IMGAG_V3 2411504-2404739 E
EGN_Mt090430 20090702
Length = 626
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 99/114 (86%), Gaps = 2/114 (1%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
Q+LMLQP + TKV+CLT V+PDELKDDE+YE+IL+DMR E KFG LVNVVIPRP D
Sbjct: 513 QKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNLVNVVIPRPRPD 572
Query: 59 SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYDG 112
E PGVGKVFLEYAD++G+TKAR+G+NGRKFGGNQV+AV++PENKF QG+Y+G
Sbjct: 573 GELCPGVGKVFLEYADVDGSTKARSGLNGRKFGGNQVIAVFYPENKFAQGDYEG 626
>IMGA|Medtr4g032620.1 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V3 7920124-7915250 E
EGN_Mt090430 20090702
Length = 586
Score = 159 bits (401), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 94/114 (82%), Gaps = 2/114 (1%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
Q+L+ QP + TKVVCLT V P+ELK+DE++E+I++DMR E KFG+LVNVVIPRP D
Sbjct: 473 QKLIFQPALVATKVVCLTNAVAPEELKEDEDFEEIIDDMRQECSKFGSLVNVVIPRPQPD 532
Query: 59 SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYDG 112
+ GVGKVFLEY DIEGATKAR G+NGRKFGGN+V+AV++ ENKF QG+Y+G
Sbjct: 533 GDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYSENKFAQGDYEG 586
>IMGA|Medtr4g032540.1 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V3 7864195-7860296 E
EGN_Mt090430 20090702
Length = 451
Score = 158 bits (400), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 94/114 (82%), Gaps = 2/114 (1%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
Q+L+ QP + TKVVCLT V P+ELK+DE++E+I++DMR E KFG+LVNVVIPRP D
Sbjct: 338 QKLIFQPALVATKVVCLTNAVAPEELKEDEDFEEIIDDMRQECSKFGSLVNVVIPRPQPD 397
Query: 59 SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYDG 112
+ GVGKVFLEY DIEGATKAR G+NGRKFGGN+V+AV++ ENKF QG+Y+G
Sbjct: 398 GDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYSENKFAQGDYEG 451
>IMGA|Medtr2g014820.1 Nucleotide-binding, alpha-beta plait
chr02_pseudomolecule_IMGAG_V3 3906249-3910876 E
EGN_Mt090430 20090702
Length = 297
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 76/103 (73%)
Query: 9 PTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNADSEALPGVGKV 68
PTKV+CLT+ V ++L D+ EYE+ILEDMR E KFGTLVNVVIPRPN + E G+GKV
Sbjct: 194 PTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLVNVVIPRPNPNGELSTGIGKV 253
Query: 69 FLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYD 111
FLEY+D A+ +NGRKFGG+ V A Y+PE K++ +YD
Sbjct: 254 FLEYSDCTACLAAKNALNGRKFGGSIVTAFYYPEEKYHSMDYD 296
>IMGA|Medtr3g013160.3 Nucleotide-binding, alpha-beta plait
chr03_pseudomolecule_IMGAG_V3 2411504-2405920 E
EGN_Mt090430 20090702
Length = 564
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 2/50 (4%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLV 48
Q+LMLQP + TKV+CLT V+PDELKDDE+YE+IL+DMR E KFG +
Sbjct: 513 QKLMLQPALVATKVLCLTHAVSPDELKDDEDYEEILDDMRQECSKFGNIC 562
>IMGA|Medtr4g115110.1 D111/G-patch; RNA-binding region RNP-1 (RNA
recognition motif) chr04_pseudomolecule_IMGAG_V3
26565169-26560131 E EGN_Mt090430 20090702
Length = 390
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 13/106 (12%)
Query: 8 LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVI---PRPN-ADSEALP 63
+PT+V+ L +V P E+ D+E ED ++ +E K+GT+ V+I PN EA+
Sbjct: 282 VPTRVLLLRNMVGPGEV--DDELED---EVGSECAKYGTVTRVLIFEITEPNFPTDEAV- 335
Query: 64 GVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGE 109
++F+++ E TKA ++GR FGG V A ++ E+KF + E
Sbjct: 336 ---RIFVQFERSEETTKALVDLDGRYFGGRTVRATFYDEDKFSKNE 378