Jatropha Genome Database

JcCB0579481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0579481.10 - phase: 2 /partial
         (63 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g086330.1 Ribosome recycling factor chr01_pseudomolec...    71   2e-13

>IMGA|Medtr1g086330.1 Ribosome recycling factor
           chr01_pseudomolecule_IMGAG_V3 17057287-17050581 F
           EGN_Mt090430 20090702
          Length = 262

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query: 1   LKVIEKAIVNSDLGLTPSNDGEVIRLSIPQLTSDRRKVFPLFFFWDLASGSLSNRSLR 58
           LK IEKAIVNSD+G+TP+NDGEVIRLSIPQLTSDRRK         +  G ++ R++R
Sbjct: 152 LKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIR 209