Jatropha Genome Database

JcCB0578941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0578941.10 - phase: 1 /pseudo/partial
         (187 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233676_12.3 ZIM AC233676.2 46780-50846 E EGN_Mt090430 200...   100   4e-22
IMGA|AC233676_12.1 ZIM AC233676.2 46780-50846 E EGN_Mt090430 200...   100   5e-22
IMGA|Medtr6g083230.1 ZIM chr06_pseudomolecule_IMGAG_V3 16829794-...    54   4e-08
IMGA|Medtr6g083230.2 ZIM chr06_pseudomolecule_IMGAG_V3 16829794-...    50   5e-07

>IMGA|AC233676_12.3 ZIM AC233676.2 46780-50846 E EGN_Mt090430
           20090702
          Length = 344

 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 86/150 (57%), Gaps = 12/150 (8%)

Query: 42  FIAGTVNVYDDISPEKAQAILFLAGNGSSISSNMAQPKIQVQAPSSKPIATDIS-PVSQX 100
           F  GTVN+++DI+PEKAQAI+ LAG+G S +SN AQP  +VQA SSK  + D   P+S  
Sbjct: 161 FYGGTVNIFNDITPEKAQAIMLLAGSGLSAASNRAQP--EVQASSSKFASGDDGLPISPP 218

Query: 101 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEILTAKSTGTTTPVS---KLESPRIASTM 157
                                         +E + AK++   TP +   K+ +P++    
Sbjct: 219 VYIPPCSGISSPLSVSSHTGPQPGSGSSSSDEFMAAKTSRGPTPTTSACKVVTPKV---- 274

Query: 158 GSVAATTMIPSAVPQARKASLARFLEKRKE 187
             V ATTMIPSA+PQARKASLARFLEKRKE
Sbjct: 275 --VNATTMIPSAIPQARKASLARFLEKRKE 302


>IMGA|AC233676_12.1 ZIM AC233676.2 46780-50846 E EGN_Mt090430
           20090702
          Length = 283

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 86/150 (57%), Gaps = 12/150 (8%)

Query: 42  FIAGTVNVYDDISPEKAQAILFLAGNGSSISSNMAQPKIQVQAPSSKPIATDIS-PVSQX 100
           F  GTVN+++DI+PEKAQAI+ LAG+G S +SN AQP  +VQA SSK  + D   P+S  
Sbjct: 100 FYGGTVNIFNDITPEKAQAIMLLAGSGLSAASNRAQP--EVQASSSKFASGDDGLPISPP 157

Query: 101 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEILTAKSTGTTTPVS---KLESPRIASTM 157
                                         +E + AK++   TP +   K+ +P++    
Sbjct: 158 VYIPPCSGISSPLSVSSHTGPQPGSGSSSSDEFMAAKTSRGPTPTTSACKVVTPKV---- 213

Query: 158 GSVAATTMIPSAVPQARKASLARFLEKRKE 187
             V ATTMIPSA+PQARKASLARFLEKRKE
Sbjct: 214 --VNATTMIPSAIPQARKASLARFLEKRKE 241


>IMGA|Medtr6g083230.1 ZIM chr06_pseudomolecule_IMGAG_V3
           16829794-16834749 E EGN_Mt090430 20090702
          Length = 440

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 131 EEILTAKSTG-TTTPVSKLESPRIASTMGSVAATTMIPSAVPQARKASLARFLEKRKE 187
            E+   +S G +  P + LESP +A+++G      + P  +PQARKASL RFLEKRKE
Sbjct: 331 NEVTIIRSLGPSNAPTNHLESPIVATSVGLTPTNVIQPVGLPQARKASLTRFLEKRKE 388



 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 28/37 (75%)

Query: 42  FIAGTVNVYDDISPEKAQAILFLAGNGSSISSNMAQP 78
           F  GTV VYDDISPEKA+AI+ LAGNG+ +   ++ P
Sbjct: 209 FYGGTVCVYDDISPEKAKAIMLLAGNGTKMQQEISIP 245


>IMGA|Medtr6g083230.2 ZIM chr06_pseudomolecule_IMGAG_V3
           16829794-16834749 E EGN_Mt090430 20090702
          Length = 379

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 28/37 (75%)

Query: 42  FIAGTVNVYDDISPEKAQAILFLAGNGSSISSNMAQP 78
           F  GTV VYDDISPEKA+AI+ LAGNG+ +   ++ P
Sbjct: 209 FYGGTVCVYDDISPEKAKAIMLLAGNGTKMQQEISIP 245