Jatropha Genome Database

JcCB0577801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0577801.10 - phase: 2 /TE/pseudo/partial
         (85 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H...    69   8e-13
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H...    68   1e-12
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole...    65   1e-11
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy...    64   1e-11
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H...    62   1e-10
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H...    60   3e-10
IMGA|Medtr2g033520.1 hypothetical protein chr02_pseudomolecule_I...    59   4e-10
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H...    55   6e-09
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po...    54   2e-08
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H...    54   2e-08
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I...    54   3e-08

>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
            EGN_Mt090430 20090702
          Length = 1414

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 14   PVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICKLGMC 73
            PV +++ KH+EI+ + I++K+  GVLKL  V+S +Q+AD  TK L  + F+  + KLG+ 
Sbjct: 1337 PVFHERTKHLEIDCHLIRDKLQSGVLKLLTVSSQDQVADFFTKALLPKPFNILLSKLGLI 1396

Query: 74   NIY-APTCGGV 83
            NIY  PTCGG+
Sbjct: 1397 NIYQPPTCGGI 1407


>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
            EGN_Mt090430 20090702
          Length = 1275

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 10   ISIIPVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICK 69
            I+  PV +++ KH+EI+ + ++EK+  GVLKL  V+S +Q+AD  TK L  + F   + K
Sbjct: 1179 IAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVSSQDQIADFFTKALLPKTFSLLLSK 1238

Query: 70   LGMCNIY-APTCGGVL 84
            LG+ +IY  PTCGG+L
Sbjct: 1239 LGLIDIYQRPTCGGLL 1254


>IMGA|Medtr8g044880.1 polyprotein-like, putative
           chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
           EGN_Mt090430 20090702
          Length = 196

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 10  ISIIPVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICK 69
           I+  PV ++  KH+EI+ + ++EK+  G+ KL  ++S +Q+AD  TK L  + F+  + K
Sbjct: 99  IAANPVFHECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSK 158

Query: 70  LGMCNIYAP-TCGGVL 84
           LGM +IY P TCGG+L
Sbjct: 159 LGMLDIYHPRTCGGIL 174


>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
            transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
            EGN_Mt090430 20090702
          Length = 1413

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 10   ISIIPVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICK 69
            I+  PV +++ KH+EI+ + ++EK+   ++KL  VTS +QLAD  TK L  + FH  + K
Sbjct: 1324 IAANPVFHERTKHLEIDCHLVREKLQACIMKLLPVTSADQLADFFTKPLLPQPFHTLLFK 1383

Query: 70   LGMCNIYA-PTCGG 82
            LGM NIY  P C G
Sbjct: 1384 LGMLNIYHFPACAG 1397


>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
           fold, related chr05_pseudomolecule_IMGAG_V3
           36507044-36505941 H EGN_Mt090430 20090702
          Length = 367

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 17  YDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICKLGMCNIY 76
           +++ KHIE++ + ++EK+ Q +  L  V+S  QLADVLTK L+   F NFI KLG+ +IY
Sbjct: 305 HERTKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLGLKDIY 364

Query: 77  AP 78
            P
Sbjct: 365 TP 366


>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
           EGN_Mt090430 20090702
          Length = 710

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 46/65 (70%)

Query: 14  PVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICKLGMC 73
           PV +++ KH+EI+ + ++EK+  G++KL  ++S NQLAD  TK +  + F++ + KLG+ 
Sbjct: 644 PVFHERTKHLEIDCHIVREKLAAGIMKLLPISSKNQLADCFTKSILPQPFNSLLFKLGLV 703

Query: 74  NIYAP 78
           +I+ P
Sbjct: 704 DIHKP 708


>IMGA|Medtr2g033520.1 hypothetical protein
          chr02_pseudomolecule_IMGAG_V3 9151691-9150256 E
          EGN_Mt090430 20090702
          Length = 61

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 37/60 (61%)

Query: 20 AKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICKLGMCNIYAPT 79
          + H+EI+  FI E V    LKL HV +D QL D LTK L   QFH  +  LG+ NIY+PT
Sbjct: 2  SSHVEIDCPFICENVKFQFLKLVHVNTDQQLVDPLTKALPRIQFHLLVSMLGLINIYSPT 61


>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
            chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
            EGN_Mt090430 20090702
          Length = 1396

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 10   ISIIPVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICK 69
            I+  PV +++ KH+EI+ + ++EK+  G+LKL  V+S  Q+AD  TK L+ + F+  + K
Sbjct: 1307 IAANPVFHERTKHLEIDCHIVREKLHSGILKLLPVSSKEQVADFFTKSLHPQPFNLLLSK 1366

Query: 70   LGMCNIYA-PTCGGVL 84
            L + +IY  P CGG+L
Sbjct: 1367 LSLLDIYQPPACGGLL 1382


>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
           polymerase chr05_pseudomolecule_IMGAG_V3
           33218578-33217607 H EGN_Mt090430 20090702
          Length = 309

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 41/66 (62%)

Query: 14  PVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQFHNFICKLGMC 73
           PV +++ KHIE++ +FI+  + +G +  ++V +  Q AD+ TK L ++QF     KLG+ 
Sbjct: 244 PVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKALGAKQFQELTFKLGVH 303

Query: 74  NIYAPT 79
             + PT
Sbjct: 304 YPHTPT 309


>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
          fold, related chr04_pseudomolecule_IMGAG_V3
          10571280-10570869 H EGN_Mt090430 20090702
          Length = 106

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 41/57 (71%)

Query: 7  TFSISIIPVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGLNSRQF 63
          T +++  P+ + ++KHIE+  ++++E+V +G LKL H  S+NQ+ADVLTKG+    F
Sbjct: 34 TINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVKIEVF 90


>IMGA|Medtr4g045170.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
           EGN_Mt090430 20090702
          Length = 197

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 41/54 (75%)

Query: 5   MQTFSISIIPVQYDQAKHIEINRNFIKEKVIQGVLKLTHVTSDNQLADVLTKGL 58
           + T +++  P+ + ++KHIE+  ++++E+V +G LKL H  S+NQ+ADVLTKG+
Sbjct: 123 ISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGV 176