Jatropha Genome Database

JcCB0577381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0577381.10 + phase: 0 /pseudo/partial
         (110 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g145150.1 ATP phosphoribosyltransferase; ; chr08_pseu...    69   6e-13
IMGA|Medtr2g005840.1 ATP phosphoribosyltransferase; ; chr02_pseu...    65   7e-12
IMGA|Medtr2g005840.2 ATP phosphoribosyltransferase; ; chr02_pseu...    54   2e-08
IMGA|Medtr2g005840.3 ATP phosphoribosyltransferase; ; chr02_pseu...    54   2e-08

>IMGA|Medtr8g145150.1 ATP phosphoribosyltransferase; ;
           chr08_pseudomolecule_IMGAG_V3 35226220-35220908 E
           EGN_Mt090430 20090702
          Length = 373

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 54/96 (56%), Gaps = 19/96 (19%)

Query: 16  RPKVHCSRKLLSGDLDLGIVVLIQSMNMDGGMKILSLFMMLLSMGIAVY-PLQYVFCLFS 74
           RPK    RKLLSGDLDLGIV          G+ +L+ F       I V+  L+Y  C  S
Sbjct: 89  RPK-DIVRKLLSGDLDLGIV----------GLDVLTEFGQGNEDLIVVHEALEYGDCRLS 137

Query: 75  WFRCSQLQLIPKYGIFENINSIGELGKMPQWTAEKP 110
                    IP+YGIFEN+NS+ EL KMPQWT +KP
Sbjct: 138 I-------AIPQYGIFENVNSLEELAKMPQWTEDKP 166


>IMGA|Medtr2g005840.1 ATP phosphoribosyltransferase; ;
           chr02_pseudomolecule_IMGAG_V3 432467-428965 E
           EGN_Mt090430 20090702
          Length = 367

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 48/95 (50%), Gaps = 23/95 (24%)

Query: 16  RPKVHCSRKLLSGDLDLGIVVLIQSMNMDGGMKILSLFMMLLSMGIAVYPLQYVFCLFSW 75
           RPK    RKLLSGDLDLGIV       +D G   L +    +  G               
Sbjct: 89  RPK-DIVRKLLSGDLDLGIV------GLDIGNDDLIIVHEAMEYG--------------- 126

Query: 76  FRCSQLQLIPKYGIFENINSIGELGKMPQWTAEKP 110
             C     IP+YGIFEN+NS+ EL KMPQWT EKP
Sbjct: 127 -DCRLSIAIPQYGIFENVNSLEELAKMPQWTKEKP 160


>IMGA|Medtr2g005840.2 ATP phosphoribosyltransferase; ;
           chr02_pseudomolecule_IMGAG_V3 432467-428965 E
           EGN_Mt090430 20090702
          Length = 363

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/27 (77%), Positives = 24/27 (88%)

Query: 84  IPKYGIFENINSIGELGKMPQWTAEKP 110
           IP+YGIFEN+NS+ EL KMPQWT EKP
Sbjct: 130 IPQYGIFENVNSLEELAKMPQWTKEKP 156


>IMGA|Medtr2g005840.3 ATP phosphoribosyltransferase; ;
           chr02_pseudomolecule_IMGAG_V3 435275-428965 E
           EGN_Mt090430 20090702
          Length = 245

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 24/27 (88%)

Query: 84  IPKYGIFENINSIGELGKMPQWTAEKP 110
           IP+YGIFEN+NS+ EL KMPQWT EKP
Sbjct: 12  IPQYGIFENVNSLEELAKMPQWTKEKP 38