Jatropha Genome Database
- JcCB0574741.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0574741.10 + phase: 2 /partial
(260 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr1g008870.1 WD-40 repeat family protein, related chr01_... 341 2e-94
IMGA|Medtr4g142410.1 WD-40 repeat family protein chr04_pseudomol... 223 9e-59
IMGA|Medtr4g142040.1 WD-40 repeat family protein chr04_pseudomol... 223 9e-59
IMGA|Medtr3g143870.1 WD40-like chr03_pseudomolecule_IMGAG_V3 371... 216 8e-57
IMGA|Medtr7g067570.1 WD40-like chr07_pseudomolecule_IMGAG_V3 136... 201 4e-52
IMGA|Medtr8g138930.1 Protein will die slowly, putative chr08_pse... 76 2e-14
IMGA|Medtr1g086290.1 WD repeat-containing protein 5, putative ch... 66 1e-11
IMGA|Medtr4g155480.1 Guanine nucleotide-binding protein subunit ... 50 8e-07
IMGA|Medtr5g016350.1 WD40-like chr05_pseudomolecule_IMGAG_V3 571... 50 9e-07
IMGA|Medtr5g022590.1 Splicing factor motif; WD40-like; chr05_pse... 48 4e-06
IMGA|Medtr5g016370.1 Lissencephaly type-1-like homology motif; W... 48 4e-06
>IMGA|Medtr1g008870.1 WD-40 repeat family protein, related
chr01_pseudomolecule_IMGAG_V3 939949-943595 E
EGN_Mt090430 20090702
Length = 709
Score = 341 bits (875), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 160/254 (62%), Positives = 194/254 (76%)
Query: 2 RAQMVRVRSYKKRFKELSALYMGQEVAAHEGSILTMKFSPDGQYLASAGEDGIVRVWQVI 61
R Q V+VR KK+ KELSALYMGQ++ AHEG I TMKFSPDGQYLASAGEDGIVR+WQV+
Sbjct: 230 RIQRVKVRQCKKQRKELSALYMGQDIQAHEGPIFTMKFSPDGQYLASAGEDGIVRLWQVV 289
Query: 62 ESERSDEFGRLDIDPSHVYFTVNSHSEVVPLHADKEKNSKFKDLRKNSHSACVILPQKIF 121
E ER +E ++D S +YFTVN SE+ PL DK+K + K L+K S SAC+I P K+F
Sbjct: 290 EDERHNEIDIPEVDTSCIYFTVNDLSELTPLFMDKDKITNVKTLKKTSDSACIIFPPKVF 349
Query: 122 QISEKPIHEFYGHRGEVLDLSWSKNKYILSSSTDKTVRLWQVGCNRCLQVFSHNNYVTCV 181
++ EKP+HEF+GH GE+LDLSWSKN Y+LSSS DKTVRLWQVG + CL+VFSH+NYVTC+
Sbjct: 350 RLMEKPLHEFHGHGGEILDLSWSKNNYLLSSSVDKTVRLWQVGHDCCLKVFSHSNYVTCI 409
Query: 182 QFNPMXXXXXXXXXXXXKVRIWTIPGCQVIDWIDITEIVTAVCYRPDGKGLVVGSMTGNC 241
QFNP+ KVRIW IP C V+DW D+ EIVTAVCYRPDG+ ++GSMTGNC
Sbjct: 410 QFNPVDDDYFISGSIDGKVRIWGIPDCHVVDWTDVKEIVTAVCYRPDGQVGIIGSMTGNC 469
Query: 242 RFYDASGMSLFLIS 255
RFY+ S L + S
Sbjct: 470 RFYNVSDNQLRMQS 483
>IMGA|Medtr4g142410.1 WD-40 repeat family protein
chr04_pseudomolecule_IMGAG_V3 35429460-35424793 E
EGN_Mt090430 20090702
Length = 645
Score = 223 bits (567), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 43/247 (17%)
Query: 2 RAQMVRVRSYKKRFKELSALYMGQEVAAHEGSILTMKFSPDGQYLASAGEDGIVRVWQVI 61
+ + V+V+ KKR+ E S +Y+GQE+ AH+G I TMKFSP+GQYLAS GEDG+VR+W+V
Sbjct: 201 KTRRVKVKQNKKRWMEFSEVYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWRVF 260
Query: 62 ESERSDEFGRLDIDPSHVYFTVNSHSEVVPLHADKEKNSKFKDLRKNSHSACVILPQKIF 121
R SH V LP IF
Sbjct: 261 S-------------------------------------------RNKSHPPFVSLPNDIF 277
Query: 122 QISEKPIHEFYGHRGEVLDLSWSKNKYILSSSTDKTVRLWQVGCNRCLQVFSHNNYVTCV 181
QI E P+ E +GH ++LDL+WS + +LSSS DKTVR W++ C++CL VF H +VTC+
Sbjct: 278 QIEESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVRAWKISCDQCLSVFPHKGFVTCI 337
Query: 182 QFNPMXXXXXXXXXXXXKVRIWTIPGCQVIDWIDITEIVTAVCYRPDGKGLVVGSMTGNC 241
QFNP+ KVRIW I +VIDW DI ++++A+ Y+ DGKG VVGS+TG C
Sbjct: 338 QFNPVNENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSLTGTC 397
Query: 242 RFYDASG 248
RFY ASG
Sbjct: 398 RFYVASG 404
>IMGA|Medtr4g142040.1 WD-40 repeat family protein
chr04_pseudomolecule_IMGAG_V3 35213072-35209413 E
EGN_Mt090430 20090702
Length = 645
Score = 223 bits (567), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 144/247 (58%), Gaps = 43/247 (17%)
Query: 2 RAQMVRVRSYKKRFKELSALYMGQEVAAHEGSILTMKFSPDGQYLASAGEDGIVRVWQVI 61
+ + V+V+ KKR+ E S +Y+GQE+ AH+G I TMKFSP+GQYLAS GEDG+VR+W+V
Sbjct: 201 KTRRVKVKQNKKRWMEFSEVYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWRVF 260
Query: 62 ESERSDEFGRLDIDPSHVYFTVNSHSEVVPLHADKEKNSKFKDLRKNSHSACVILPQKIF 121
R SH V LP IF
Sbjct: 261 S-------------------------------------------RNKSHPPFVSLPNDIF 277
Query: 122 QISEKPIHEFYGHRGEVLDLSWSKNKYILSSSTDKTVRLWQVGCNRCLQVFSHNNYVTCV 181
QI E P+ E +GH ++LDL+WS + +LSSS DKTVR W++ C++CL VF H +VTC+
Sbjct: 278 QIEESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVRAWKISCDQCLSVFPHKGFVTCI 337
Query: 182 QFNPMXXXXXXXXXXXXKVRIWTIPGCQVIDWIDITEIVTAVCYRPDGKGLVVGSMTGNC 241
QFNP+ KVRIW I +VIDW DI ++++A+ Y+ DGKG VVGS+TG C
Sbjct: 338 QFNPVNENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSLTGTC 397
Query: 242 RFYDASG 248
RFY ASG
Sbjct: 398 RFYVASG 404
>IMGA|Medtr3g143870.1 WD40-like chr03_pseudomolecule_IMGAG_V3
37199076-37194576 E EGN_Mt090430 20090702
Length = 628
Score = 216 bits (550), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 158/253 (62%), Gaps = 19/253 (7%)
Query: 2 RAQMVRVRSYKKRFKELSALYMGQEVAAHEGSILTMKFSPDGQYLASAGEDGIVRVWQVI 61
+A + VR KK + + SA+Y GQE+ AH+G I TMKFSP+GQYLA+ GEDG+VR+W V
Sbjct: 165 KALQINVRHNKKSWNQFSAVYTGQEIRAHKGLIWTMKFSPNGQYLATGGEDGVVRIWCVS 224
Query: 62 ESERSDE-FGRLDIDPSHVYFTVNSHSEVVPLHADKEKNSKFKDLRKNSHSACVILPQKI 120
+ S F + D D S K K+ +K S +LP+KI
Sbjct: 225 SLKASSICFAKEDRDIS------------------KLKHDMSFSPKKCSSKTPAVLPRKI 266
Query: 121 FQISEKPIHEFYGHRGEVLDLSWSKNKYILSSSTDKTVRLWQVGCNRCLQVFSHNNYVTC 180
+I E P+ E YGH +V+DL+WS + +LSSS DKTVR+W++GCN+ L+VF HN+YVTC
Sbjct: 267 LKIEESPLQELYGHSSDVMDLAWSDSDMLLSSSMDKTVRMWKIGCNQSLKVFHHNDYVTC 326
Query: 181 VQFNPMXXXXXXXXXXXXKVRIWTIPGCQVIDWIDITEIVTAVCYRPDGKGLVVGSMTGN 240
+QFNP+ KVRIW + +V+DW D+ +I++A+ Y+PDGKG VVGS++G
Sbjct: 327 IQFNPVDENHFISGSIDGKVRIWGVHEERVVDWADVRDIISAISYQPDGKGFVVGSLSGT 386
Query: 241 CRFYDASGMSLFL 253
CRFY ASG L
Sbjct: 387 CRFYVASGKQFQL 399
>IMGA|Medtr7g067570.1 WD40-like chr07_pseudomolecule_IMGAG_V3
13684050-13679554 H EGN_Mt090430 20090702
Length = 948
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 120/263 (45%), Positives = 157/263 (59%), Gaps = 9/263 (3%)
Query: 1 ARAQMVRVRSYKKRFKELSALYMGQEVAAHEGSILTMKFSPDGQYLASAGEDGIVRVWQV 60
+ + V+VR K KELSAL++ QE AHEG I TMKFS DG++LA+AGED ++ +W+V
Sbjct: 387 GKNKWVKVRQSGKSQKELSALHLCQEFQAHEGCIWTMKFSLDGRFLATAGEDKVIHIWEV 446
Query: 61 IESE----RSDEFGRLDIDPSHVYFTVNSHSEVVPLHADKEKNSKFKDLRKNSHSAC--- 113
E E R +E I PS + + V H+ +K KF R +A
Sbjct: 447 QECEVMSMRGEEGNLTPIHPS--LLSSMEREKNVDTHSLVKKKGKFGSKRGGGSAAIPEY 504
Query: 114 VILPQKIFQISEKPIHEFYGHRGEVLDLSWSKNKYILSSSTDKTVRLWQVGCNRCLQVFS 173
V +P+ +F SEKP F+GH EVLDLSWS+++ +LSSS DKTVRLW + CL+ F+
Sbjct: 505 VHVPENVFTFSEKPYCSFHGHLDEVLDLSWSRSQLLLSSSMDKTVRLWDLETKTCLKFFA 564
Query: 174 HNNYVTCVQFNPMXXXXXXXXXXXXKVRIWTIPGCQVIDWIDITEIVTAVCYRPDGKGLV 233
HN+YVTCVQFNPM KVR+W I V+DW DI E+VTAV Y PDG+G++
Sbjct: 565 HNDYVTCVQFNPMDEDYFISGSLDAKVRMWNISARLVVDWTDIHEMVTAVSYTPDGQGVL 624
Query: 234 VGSMTGNCRFYDASGMSLFLIST 256
VG+ GNCR Y L ST
Sbjct: 625 VGTQKGNCRTYGIEDYKLTQTST 647
>IMGA|Medtr8g138930.1 Protein will die slowly, putative
chr08_pseudomolecule_IMGAG_V3 33779354-33776416 E
EGN_Mt090430 20090702
Length = 326
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 96/228 (42%), Gaps = 57/228 (25%)
Query: 23 MGQEVAAHEGSILTMKFSPDGQYLASAGEDGIVRVWQVIESERSDEFGRLDIDPSHVYFT 82
+ Q + H+ +I +KFS +G+ LAS+ D +R + S
Sbjct: 19 LSQTLTGHKRAISAVKFSSNGRLLASSSADKTLRTYGFTNS------------------- 59
Query: 83 VNSHSEVVPLHADKEKNSKFKDLRKNSHSACVILPQKIFQISEKPIHEFYGHRGEVLDLS 142
D + NS ++ P+ ++ GH+ V DL+
Sbjct: 60 ------------DSDSNS----------------------LTLSPMQQYEGHQHGVSDLA 85
Query: 143 WSKN-KYILSSSTDKTVRLWQVGCNRCLQVF-SHNNYVTCVQFNPMXXXXXXXXXXXXKV 200
+S + +Y++S+S DKT+RLW V ++ H NYV CV FNP V
Sbjct: 86 FSSDSRYLVSASDDKTIRLWDVPTGSLVKTLHGHTNYVFCVNFNPQSNVIVSGSFDET-V 144
Query: 201 RIWTIPGCQVIDWIDI-TEIVTAVCYRPDGKGLVVGSMTGNCRFYDAS 247
R+W + + + + ++ VTAV + DG +V S G CR +DAS
Sbjct: 145 RVWDVKSGKCLKVLPAHSDPVTAVDFNRDGTLIVSSSYDGLCRIWDAS 192
>IMGA|Medtr1g086290.1 WD repeat-containing protein 5, putative
chr01_pseudomolecule_IMGAG_V3 17031904-17030156 E
EGN_Mt090430 20090702
Length = 316
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 128 IHEFYGHRGEVLDLSWSKNK-YILSSSTDKTVRLWQVGCNRCLQVF-SHNNYVTCVQFNP 185
+H GH + D++WS + YI S+S DKT+R+W C++ H + V CV FNP
Sbjct: 62 LHRLTGHSEGINDIAWSSDSHYICSASDDKTLRIWDANTGDCVKTLRGHGHNVFCVNFNP 121
Query: 186 MXXXXXXXXXXXXKVRIWTIPGCQVIDWIDITEI-VTAVCYRPDGKGLVVGSMTGNCRFY 244
VR+W + + + I + VT+V + DG +V GS G+C+ +
Sbjct: 122 QSNYIVSGSFDET-VRVWEVKTGKSVHVIKAHAMPVTSVDFNRDGSLIVSGSHDGSCKIW 180
Query: 245 DASGMSLF 252
D + +L
Sbjct: 181 DTNSGALL 188
>IMGA|Medtr4g155480.1 Guanine nucleotide-binding protein subunit
beta-like protein, identical
chr04_pseudomolecule_IMGAG_V3 38381875-38379567 F
EGN_Mt090430 20090702
Length = 325
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 130 EFYGHRGEVLDLSWS-KNKYILSSSTDKTVRLWQV--GCNRCLQVF-SHNNYVTCVQFNP 185
F GH +VL +++S N+ I+S+S D+T++LW C +Q +H+++V+CV+F+P
Sbjct: 100 RFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSP 159
Query: 186 MXXXXXXXXXXXXK-VRIWTIPGCQVIDWI-DITEIVTAVCYRPDGKGLVVGSMTGNCRF 243
+ V++W + C++ + + + V V PDG G G
Sbjct: 160 STLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILL 219
Query: 244 YD-ASGMSLFLISTHTI 259
+D A G L+ + +I
Sbjct: 220 WDLAEGKRLYSLDAGSI 236
>IMGA|Medtr5g016350.1 WD40-like chr05_pseudomolecule_IMGAG_V3
5718790-5712762 E EGN_Mt090430 20090702
Length = 350
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 34/236 (14%)
Query: 34 ILTMKFSPDGQYLASAGEDGIVRVWQVIESERSDEFGRLDIDPSHVYFTVNSHSEVVPLH 93
+ T+ ++ +G LA+ DG R+W +S T++ H + L
Sbjct: 64 VTTLDWNGEGTLLATGAYDGYARIWTTNGELKS---------------TLSKHKGAI-LS 107
Query: 94 ADKEKNSKFKDLRKNSHSACVILPQKIFQISEKPIHEFYGHRGEVLDLSWSKNKYILSSS 153
K + +A V Q +EK +F H+G LD+ W N SSS
Sbjct: 108 LKWNKKGDYILTGSCDETAIVWDVQ-----AEKWKQQFAFHKGPTLDVDWRNNVSFASSS 162
Query: 154 TDKTVRLWQVGCNRCLQVF-SHNNYVTCVQFNPMXXXXXXXXXXXXKVRIWTIPGCQVI- 211
TD + + ++G N ++ F H + V C++++P +IW++ + I
Sbjct: 163 TDTMIHVCKIGDNHPIKTFEGHQSEVNCIKWDPTGSLLASCSDDNT-AKIWSMKQDKYIH 221
Query: 212 DWIDITEIVTAVCYRPDGKG---------LVVGSMTGNCRFYDAS-GMSLFLISTH 257
D+ + ++ V + + P G G L S + +DA G ++ +S H
Sbjct: 222 DFREHSKEVYTIRWSPTGPGTNNPNKKLVLASASFDSTVKLWDAELGKLIYSLSGH 277
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 33/235 (14%)
Query: 27 VAAHEGSILTMKFSPDGQYLASAGEDGIVRVWQVIESERSDEFG-----RLDID-PSHVY 80
++ H+G+IL++K++ G Y+ + D VW V + +F LD+D ++V
Sbjct: 98 LSKHKGAILSLKWNKKGDYILTGSCDETAIVWDVQAEKWKQQFAFHKGPTLDVDWRNNVS 157
Query: 81 FTVNSHSEVV---------PLHADKEKNSKFKDLRKNSHSACVIL-----PQKIFQI-SE 125
F +S ++ P+ + S+ ++ + + + KI+ + +
Sbjct: 158 FASSSTDTMIHVCKIGDNHPIKTFEGHQSEVNCIKWDPTGSLLASCSDDNTAKIWSMKQD 217
Query: 126 KPIHEFYGHRGEVLDLSWS----------KNKYILSSSTDKTVRLWQVGCNRCLQVFS-H 174
K IH+F H EV + WS K + S+S D TV+LW + + S H
Sbjct: 218 KYIHDFREHSKEVYTIRWSPTGPGTNNPNKKLVLASASFDSTVKLWDAELGKLIYSLSGH 277
Query: 175 NNYVTCVQFNPMXXXXXXXXXXXXKVRIWTIPGCQVIDWIDITEIVTAVCYRPDG 229
+ V V F+P + IW++ ++I + + VC+ +G
Sbjct: 278 RDGVYSVAFSP-NGEYLASGSPDKSINIWSLNDGKIIKTYNGNGGIFEVCWNKEG 331
>IMGA|Medtr5g022590.1 Splicing factor motif; WD40-like;
chr05_pseudomolecule_IMGAG_V3 8834564-8831951 E
EGN_Mt090430 20090702
Length = 488
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 22/178 (12%)
Query: 29 AHEGSILTMKFSPDGQYLASAGEDGIVRVWQVIESERSDEFGRLDIDPSHVYFTVNSHSE 88
H + + F P G+YL +A +D R+W V E +E + VY H
Sbjct: 277 GHSDRLARIAFHPSGKYLGTASDDKTWRLWDV---ETGEELLLQEGHSREVYSLAFHHDG 333
Query: 89 VVPLHADKEKNSKFKDLRKNSHSACVILPQKIFQISEKPIHEFYGHRGEVLDLSWSKNKY 148
+ K+ ++ DLR +++ + GH + +S+S N Y
Sbjct: 334 SLAASCGKDALARVWDLR-----------------TKRSLLALEGHVKPIRGISFSPNGY 376
Query: 149 ILSS-STDKTVRLWQVGCNRCL-QVFSHNNYVTCVQFNPMXXXXXXXXXXXXKVRIWT 204
L++ D T R+W + N+ L + +H+ ++ V+F P ++W+
Sbjct: 377 HLATGGEDNTCRIWDLRKNKSLYTIAAHSKLISQVKFEPQEGYFLVTTSSDMTAKVWS 434
>IMGA|Medtr5g016370.1 Lissencephaly type-1-like homology motif;
WD40-like; chr05_pseudomolecule_IMGAG_V3 5736088-5728226
E EGN_Mt090430 20090702
Length = 595
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 28 AAHEGSILTMKFSPDGQYLASAGEDGIVRVWQVIES-------ERSDEFGRLDIDPSHVY 80
A H+G + +K+ P G LAS +D ++W + + E S E + P+
Sbjct: 427 AGHQGEVNCIKWDPTGSILASCSDDNTAKIWSMKQDKYIHDFREHSKEIYAIRWSPTGPG 486
Query: 81 FTVNSHSEVVPLHADKEKNSKFKDLRKNSHSACVILPQKIFQISEKPIHEFYGHRGEVLD 140
T N + ++V A + K D K IH GHR V
Sbjct: 487 -TNNPNKKLVLASASCDSTVKLWDAELG-----------------KLIHSLNGHRDRVYT 528
Query: 141 LSWSKN-KYILSSSTDKTVRLWQVGCNRCLQVFSHNNYVTCVQFN 184
+S+S N +Y+ S S DK++ +W + + ++ + N + V +N
Sbjct: 529 ISFSPNGEYLASGSPDKSINIWSLNDGKIIKTYKGNGGIFEVCWN 573