Jatropha Genome Database

JcCB0572431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0572431.10 + phase: 0 /partial
         (325 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g133810.1 Thioredoxin fold chr08_pseudomolecule_IMGAG...    64   8e-11

>IMGA|Medtr8g133810.1 Thioredoxin fold chr08_pseudomolecule_IMGAG_V3
           32012972-32011398 E EGN_Mt090430 20090702
          Length = 341

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 41/51 (80%), Gaps = 2/51 (3%)

Query: 277 KKIEICMGGKCKKMGAIALLEEFEK--KVGKEGAVVGCKCMGKCKNAPNVK 325
           K+IE+CMG KCKK GA ALL+EFEK   V  EG VVGCKCMGKCK APNV+
Sbjct: 235 KRIEVCMGNKCKKSGAAALLQEFEKVVGVEGEGVVVGCKCMGKCKTAPNVR 285