Jatropha Genome Database

JcCB0571821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0571821.10 + phase: 2 /partial
         (133 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g129820.1 Krr1 chr02_pseudomolecule_IMGAG_V3 31498133...    87   4e-18

>IMGA|Medtr2g129820.1 Krr1 chr02_pseudomolecule_IMGAG_V3
           31498133-31501523 E EGN_Mt090430 20090702
          Length = 658

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 39/155 (25%)

Query: 1   YGLKTEEILMLDDRELNQYVSVKKLVPYKEREWKVPDNKRFQQKMWIRELMRGRLNHLKT 60
           +GL T EIL++DD+ELNQ++S+KKL PY+E E K+   KR+  KM  +E++R        
Sbjct: 504 FGLDTPEILLIDDKELNQHISLKKLAPYQEEELKLSKQKRYMLKMRAKEILRA---ASLG 560

Query: 61  NKKNRSKVDGDKS--------------------TSSVDSHQD---------------GQV 85
            KK RSKVD  KS                    T+S+D  ++               G V
Sbjct: 561 KKKKRSKVDSSKSTKVDSSKLTSNNVVEEEKANTASLDKKRNKKPKADSSKSTSSNSGVV 620

Query: 86  EFEESNVKKEKLSRQAKRRRRQAELKLPASRLVAY 120
           E E+SN ++ K SR+AKRR  +A+LKLP SRL AY
Sbjct: 621 EDEKSNTEESK-SRKAKRRENRAKLKLPESRLKAY 654