Jatropha Genome Database
- JcCB0568851.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0568851.10 - phase: 0 /partial
(342 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g110710.1 Zinc finger, CCCH-type chr07_pseudomolecule... 334 4e-92
IMGA|Medtr3g028690.1 Zinc finger, CCCH-type chr03_pseudomolecule... 325 3e-89
IMGA|Medtr5g090250.1 Zinc finger, CCCH-type chr05_pseudomolecule... 72 6e-13
IMGA|Medtr5g079420.1 Zinc finger, CCCH-type chr05_pseudomolecule... 54 8e-08
IMGA|Medtr1g090580.1 Zinc finger, CCCH-type chr01_pseudomolecule... 50 1e-06
IMGA|Medtr1g090460.1 Zinc finger, CCCH-type chr01_pseudomolecule... 50 1e-06
>IMGA|Medtr7g110710.1 Zinc finger, CCCH-type
chr07_pseudomolecule_IMGAG_V3 25833012-25836320 E
EGN_Mt090430 20090702
Length = 734
Score = 334 bits (856), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 198/317 (62%), Positives = 233/317 (73%), Gaps = 15/317 (4%)
Query: 24 FNQPMSPTASSISHSSLAWPQPNVPTLHLPAXXXXXXXXXXXXXXXDIPPEDLNLLSDFD 83
F PMSP+ + ISH+S+AWPQPN+P LHLP DI +D LLSD+D
Sbjct: 411 FTPPMSPSGNGISHNSVAWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDDFELLSDYD 470
Query: 84 AQQQILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEISSPRYSD--QAAAVFS 141
QQQ+LN+L C S NS SL+RSGR K L PSNL++LFSAE SSPRY+D + VFS
Sbjct: 471 QQQQLLNELACLSPRHINSNSLSRSGRMKPLNPSNLDDLFSAESSSPRYADPNLTSTVFS 530
Query: 142 PTHKSAVLNQFQQQQSMLSPINTSVFSPKNVDHPLLQ-ASFGMGSPGRMSPRSVEPISPM 200
PTHKSAV NQFQQQQ+MLSP+NT+ FS KNVDH LLQ AS+G+ GRMSPR+VEPISPM
Sbjct: 531 PTHKSAVFNQFQQQQNMLSPVNTN-FSSKNVDHHLLQAASYGVQPSGRMSPRNVEPISPM 589
Query: 201 GSRLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGD 260
GSR+S QR+KQ QQ RSLS R+ GSN+ A+ S NSW+KW SPNGKLDW+ N D
Sbjct: 590 GSRMSMLAQRDKQ-QQFRSLSFREHGSNSMLAT-AGSVNNSWSKWESPNGKLDWAHN-AD 646
Query: 261 ELGHLRRSSSFELGNNGEEPDLSWVQSLVKESPPEMLKEKFGVPVSGAA---SSGEGLNP 317
E+G LRRSSSFELGNNGEEPDLSWVQSLVKESP E +KEK +SGAA SSGEG+N
Sbjct: 647 EVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTE-IKEKLATSISGAAPGGSSGEGMNM 705
Query: 318 SSQIDS----VLESWLE 330
S+Q++S VL +WLE
Sbjct: 706 STQLESVDHAVLGTWLE 722
>IMGA|Medtr3g028690.1 Zinc finger, CCCH-type
chr03_pseudomolecule_IMGAG_V3 7439737-7435329 E
EGN_Mt090430 20090702
Length = 773
Score = 325 bits (832), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 197/316 (62%), Positives = 225/316 (71%), Gaps = 22/316 (6%)
Query: 27 PMSPTASSISHSSLAWPQPNVPTLHLPAXXXXXXXXXXXXXXXDIPPEDLN-LLSDFDAQ 85
P+SP+A + + AWPQPNVP LHLP D+P +D N +L DFD Q
Sbjct: 459 PLSPSA----NGNNAWPQPNVPALHLPGSINQTSRLRSSLSARDMPHDDFNNMLQDFDGQ 514
Query: 86 QQILNDLTCFSQSRNNSASLNRSGRSKTLTPSNLEELFSAEI-SSPRYSDQAAA-VFSPT 143
QQILNDL+CFSQ R + S+ RSGR KTLTPSNL++LF AEI SSPRYSD AAA VFSPT
Sbjct: 515 QQILNDLSCFSQPRPGAISVGRSGRPKTLTPSNLDDLFCAEIASSPRYSDPAAASVFSPT 574
Query: 144 HKSAVLNQFQQQQSMLSPINTSVFSPKNVDHPLL-QASFGMGSPGRMSPRSVEPISPMGS 202
HKSAV NQFQQ QS LSPINT+V SP NV+HPL QAS+G+ SPGRMSPRS+E +SPM S
Sbjct: 575 HKSAVFNQFQQLQSSLSPINTNVMSPTNVEHPLFHQASYGLSSPGRMSPRSMEALSPMSS 634
Query: 203 RLSAFVQREK---QHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWG-SPNGKLDWSING 258
RLSAF QREK Q QQLRSLSSR+LG+NNP S V SPVNSW+KWG SP GK DWS+N
Sbjct: 635 RLSAFAQREKQQQQQQQLRSLSSRELGANNP-LSAVGSPVNSWSKWGSSPIGKADWSVNP 693
Query: 259 GDELGHLRRSSSFELGNNGEEPDLSWVQSLVKESPPEMLKEKFGVPVSGAASSGEGLNPS 318
D G +RS+SFE GNNGEEPD+ WV SLVK+ PE KEK SG S E NP+
Sbjct: 694 ND-FGQTQRSTSFEHGNNGEEPDVGWVHSLVKDPTPEK-KEKLA--GSGPIPSVEK-NPN 748
Query: 319 SQID----SVLESWLE 330
Q D SVL +WLE
Sbjct: 749 PQADGIDHSVLGAWLE 764
>IMGA|Medtr5g090250.1 Zinc finger, CCCH-type
chr05_pseudomolecule_IMGAG_V3 35165331-35168492 E
EGN_Mt090430 20090702
Length = 668
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 17/106 (16%)
Query: 200 MGSRLSAFVQREKQHQQLRSLSSRDLG---SNNPAASIVESPVNSWTKWGSPNGKLDWSI 256
M SR +AF ++ Q R ++ LG +NP+ + + + WGSP GKLDW +
Sbjct: 527 MNSRSAAFAKQRSQSFIDRGAATHHLGLSPPSNPSCRVS----SGLSDWGSPTGKLDWGV 582
Query: 257 NGGDELGHLRRSSSFELGNNG---------EEPDLSWVQSLVKESP 293
N GDEL LR+S+SF NNG EPD+SWV SLVK+ P
Sbjct: 583 N-GDELNKLRKSASFGFRNNGPAAPTASQHAEPDVSWVNSLVKDVP 627
>IMGA|Medtr5g079420.1 Zinc finger, CCCH-type
chr05_pseudomolecule_IMGAG_V3 29562263-29566310 E
EGN_Mt090430 20090702
Length = 762
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 15/69 (21%)
Query: 241 SWTKWGSPNGKLDWSINGGDELGHLRRSSSFELGN--------------NGEEPDLSWVQ 286
+++ WGSP+G LDW+ + G+EL LR+SSSF N EPD+SWV
Sbjct: 596 AFSNWGSPDGNLDWT-SHGEELNKLRKSSSFAFRTTSTPLTPAAARAQENDYEPDVSWVN 654
Query: 287 SLVKESPPE 295
+LVK++ P+
Sbjct: 655 TLVKDATPQ 663
>IMGA|Medtr1g090580.1 Zinc finger, CCCH-type
chr01_pseudomolecule_IMGAG_V3 18392795-18390834 E
EGN_Mt090430 20090702
Length = 653
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 203 RLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGDEL 262
R+ AF +R + + S++ S P+AS V ++++ WGSP+GKLDWSI G+EL
Sbjct: 490 RVDAFSKRSQSFIECSSMAR--FNSELPSASSVAMEPSAFSGWGSPDGKLDWSIR-GNEL 546
Query: 263 GHLRRSSSFELGNNGEEPDLSWVQSLVKESP 293
++R+S SF N ++ S V P
Sbjct: 547 NNMRKSISFGFQNRSSTSTMAAALSSVAMEP 577
>IMGA|Medtr1g090460.1 Zinc finger, CCCH-type
chr01_pseudomolecule_IMGAG_V3 18344622-18346583 E
EGN_Mt090430 20090702
Length = 653
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 203 RLSAFVQREKQHQQLRSLSSRDLGSNNPAASIVESPVNSWTKWGSPNGKLDWSINGGDEL 262
R+ AF +R + + S++ S P+AS V ++++ WGSP+GKLDWSI G+EL
Sbjct: 490 RVDAFSKRSQSFIECSSMAR--FNSELPSASSVAMEPSAFSGWGSPDGKLDWSIR-GNEL 546
Query: 263 GHLRRSSSFELGNNGEEPDLSWVQSLVKESP 293
++R+S SF N ++ S V P
Sbjct: 547 NNMRKSISFGFQNRSSTSTMAAALSSVAMEP 577