Jatropha Genome Database

JcCB0551851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551851.10 - phase: 0 /partial
         (106 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g094520.1 2Fe-2S ferredoxin, iron-sulfur binding site...   139   5e-34
IMGA|Medtr5g094490.1 2Fe-2S ferredoxin, iron-sulfur binding site...   137   2e-33
IMGA|Medtr3g122600.1 [2Fe-2S]-binding; 2Fe-2S Ferredoxin-like fo...    99   5e-22
IMGA|Medtr5g094530.1 hypothetical protein chr05_pseudomolecule_I...    52   7e-08

>IMGA|Medtr5g094520.1 2Fe-2S ferredoxin, iron-sulfur binding site;
           Xanthine dehydrogenase, small subunit; Carbon-monoxide
           dehydrogenase, large subunit
           chr05_pseudomolecule_IMGAG_V3 37404021-37397275 E
           EGN_Mt090430 20090702
          Length = 1320

 Score =  139 bits (349), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 89/103 (86%)

Query: 4   DRTAATGSKNLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLV 63
           D   +    +L+F VNG++FELS +DPSTTLLEFLR+ T FKSVKL CGEGGCGAC+VL+
Sbjct: 2   DLKKSENQTSLIFCVNGEKFELSKVDPSTTLLEFLRTQTQFKSVKLGCGEGGCGACVVLI 61

Query: 64  SKYDPVLDQVEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           SKYDP+LD+VEDFT SSCLTLLCSI+GCS+TT+EG+GNSK GF
Sbjct: 62  SKYDPLLDRVEDFTASSCLTLLCSIHGCSVTTSEGIGNSKKGF 104


>IMGA|Medtr5g094490.1 2Fe-2S ferredoxin, iron-sulfur binding site;
           Xanthine dehydrogenase, small subunit; Carbon-monoxide
           dehydrogenase, large subunit
           chr05_pseudomolecule_IMGAG_V3 37388580-37380627 H
           EGN_Mt090430 20090702
          Length = 1356

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 92/106 (86%)

Query: 1   MEEDRTAATGSKNLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACI 60
           ME +++    + +L+F VNG++FELS +DPSTTL+EFLR+ T FKSVKL CGEGGCGAC+
Sbjct: 1   MEVNKSEKNQTTSLIFCVNGEKFELSKVDPSTTLIEFLRTQTRFKSVKLGCGEGGCGACV 60

Query: 61  VLVSKYDPVLDQVEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           VL+SKYDP++D+VEDFT +SCLTLLCSI+GCSITT+EG+GNSK G 
Sbjct: 61  VLISKYDPLVDRVEDFTANSCLTLLCSIHGCSITTSEGIGNSKQGL 106


>IMGA|Medtr3g122600.1 [2Fe-2S]-binding; 2Fe-2S Ferredoxin-like fold
           chr03_pseudomolecule_IMGAG_V3 30527670-30526647 E
           EGN_Mt090430 20090702
          Length = 218

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 58/74 (78%)

Query: 33  TLLEFLRSDTSFKSVKLSCGEGGCGACIVLVSKYDPVLDQVEDFTVSSCLTLLCSINGCS 92
           TLL+ L S    +   L   E GCG C+VL+SKYDP+L++VEDFT SSCLTLLCSINGCS
Sbjct: 46  TLLQNLSSGQDLREKNLLLLECGCGTCVVLISKYDPLLNRVEDFTASSCLTLLCSINGCS 105

Query: 93  ITTTEGLGNSKDGF 106
           ITT++G+GNSK GF
Sbjct: 106 ITTSDGIGNSKQGF 119


>IMGA|Medtr5g094530.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 37409740-37408217 H
          EGN_Mt090430 20090702
          Length = 59

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 13 NLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKL 49
          +L+F VNG +FELS++DPS  LLEFL + T FK VKL
Sbjct: 22 DLIFCVNGDKFELSNVDPSLPLLEFLHTQTQFKGVKL 58