Jatropha Genome Database

JcCB0550991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550991.10 - phase: 0 /partial
         (183 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233676_12.3 ZIM AC233676.2 46780-50846 E EGN_Mt090430 200...   103   4e-23
IMGA|Medtr6g083230.1 ZIM chr06_pseudomolecule_IMGAG_V3 16829794-...    71   4e-13
IMGA|Medtr6g083230.2 ZIM chr06_pseudomolecule_IMGAG_V3 16829794-...    71   4e-13

>IMGA|AC233676_12.3 ZIM AC233676.2 46780-50846 E EGN_Mt090430
           20090702
          Length = 344

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 82/156 (52%), Gaps = 26/156 (16%)

Query: 28  EIGFSKGSGIHWPFSNKVSALPHLNSFKVALEDKTKRIVSDSLASPGFLSISTADASDPS 87
           +  FS  S + WPF NKV+   +L  FKV+ +DK K I S      GF            
Sbjct: 7   QACFSNVSAVKWPFLNKVAVHSYLTPFKVSEDDKAKMISS------GF------------ 48

Query: 88  QRQFMPEIQKSFNHDRQGGSHFTLTAYPAQHEVHSVHHPLDVKMFPVSNHGSLISMAKPF 147
                  IQ SF HD Q G HF++  YP QH V+ ++   DVKMFP+SN  + +S   P 
Sbjct: 49  -------IQNSFKHDGQVGIHFSVNQYPVQHNVNFMNRHHDVKMFPISNQANSLSAVHPL 101

Query: 148 SSKNYYATSSQNMVGNTTKPQLLGGIPVTTPQTIIP 183
             KN+ AT  QN+ G   K  LLGG+PVT P +++P
Sbjct: 102 -LKNHLATFGQNINGANAKQSLLGGLPVTAPHSVLP 136


>IMGA|Medtr6g083230.1 ZIM chr06_pseudomolecule_IMGAG_V3
           16829794-16834749 E EGN_Mt090430 20090702
          Length = 440

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 29  IGFSKGSGIHWPFSNKVSALPHLNSFKVAL-EDKTKRIVSDSLASPGFLSISTADASDPS 87
           +   + SG+ W FSNKVS LP   SFK    ED+++  V D +AS G+++IST DA D +
Sbjct: 38  LCLVRSSGMQWSFSNKVSNLPQFMSFKNNTHEDRSRNNVMDPVASSGYMTISTKDAFDSN 97

Query: 88  QRQFMPEIQKSFNHDRQGGSHFTLTAYPAQ-HEVHSVHHPLDVKMFPVSNHGSLISMAKP 146
           Q+ F+   Q++    + G  H  +T YP Q  +  SV +  + +   VSN  +       
Sbjct: 98  QKSFLGVTQENLAIKQVGNKH-GITIYPIQSSDAQSVCN-QEARTISVSNQSN------- 148

Query: 147 FSSKNYYATSSQNMVGNTTKPQLLGGIPVTTPQTIIP 183
                 +  +  NMV + T  Q  G     TP +++P
Sbjct: 149 ------HVITGINMVNSVTNSQTFGSKSSATPLSVLP 179


>IMGA|Medtr6g083230.2 ZIM chr06_pseudomolecule_IMGAG_V3
           16829794-16834749 E EGN_Mt090430 20090702
          Length = 379

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 29  IGFSKGSGIHWPFSNKVSALPHLNSFKVAL-EDKTKRIVSDSLASPGFLSISTADASDPS 87
           +   + SG+ W FSNKVS LP   SFK    ED+++  V D +AS G+++IST DA D +
Sbjct: 38  LCLVRSSGMQWSFSNKVSNLPQFMSFKNNTHEDRSRNNVMDPVASSGYMTISTKDAFDSN 97

Query: 88  QRQFMPEIQKSFNHDRQGGSHFTLTAYPAQ-HEVHSVHHPLDVKMFPVSNHGSLISMAKP 146
           Q+ F+   Q++    + G  H  +T YP Q  +  SV +  + +   VSN  +       
Sbjct: 98  QKSFLGVTQENLAIKQVGNKH-GITIYPIQSSDAQSVCNQ-EARTISVSNQSN------- 148

Query: 147 FSSKNYYATSSQNMVGNTTKPQLLGGIPVTTPQTIIP 183
                 +  +  NMV + T  Q  G     TP +++P
Sbjct: 149 ------HVITGINMVNSVTNSQTFGSKSSATPLSVLP 179