Jatropha Genome Database

JcCB0550571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550571.10 + phase: 1 /pseudo/partial
         (280 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g025660.1 Amino acid-binding ACT chr07_pseudomolecule...   330   5e-91
IMGA|Medtr2g114630.1 Amino acid-binding ACT chr02_pseudomolecule...   325   2e-89
IMGA|Medtr7g124000.1 Amino acid-binding ACT chr07_pseudomolecule...   256   1e-68

>IMGA|Medtr7g025660.1 Amino acid-binding ACT
           chr07_pseudomolecule_IMGAG_V3 6331737-6326317 E
           EGN_Mt090430 20090702
          Length = 418

 Score =  330 bits (846), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 164/260 (63%), Positives = 199/260 (76%), Gaps = 7/260 (2%)

Query: 28  ELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSLPLTIAEELFSS---- 83
           EL  T++RR D C++L     E CIS ELQLAGPEY  LQ FSSLP   +EELF      
Sbjct: 159 ELFHTKERRDDVCQYLSEALGERCISSELQLAGPEYGHLQGFSSLPPAYSEELFGPELVD 218

Query: 84  --CTQAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYG 141
                 +  D ++ K  +VTVDN LS  HTLLQIQC+DQK L YD++R SKD DI++AYG
Sbjct: 219 KVSLHPLSQDMTTLKTPTVTVDNSLSSVHTLLQIQCVDQKSLCYDLMRISKDSDIKVAYG 278

Query: 142 RFSSSVKGHRNVDLFIQQ-SDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELL 200
           RF+SS KG +N+DLF+QQ  DG+KIIDP+   TLC+ LK EMLHP RVI+VN+GPD ELL
Sbjct: 279 RFNSSAKGFQNIDLFVQQKEDGQKIIDPERLKTLCTCLKEEMLHPLRVIIVNRGPDIELL 338

Query: 201 VANPVELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPI 260
           VANPVEL GKGRPRVFYDVTLALK LG+ IFSA++ RHST++RQWEVYRFLLDE+ + P+
Sbjct: 339 VANPVELSGKGRPRVFYDVTLALKALGVFIFSAEVVRHSTQERQWEVYRFLLDESRDFPL 398

Query: 261 ASAKSRKQIVDRVRKTLMGW 280
            S+K+R QIVD+VR+TLMGW
Sbjct: 399 NSSKARSQIVDKVRRTLMGW 418


>IMGA|Medtr2g114630.1 Amino acid-binding ACT
           chr02_pseudomolecule_IMGAG_V3 27133348-27130984 E
           EGN_Mt090430 20090702
          Length = 421

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/261 (61%), Positives = 191/261 (73%), Gaps = 9/261 (3%)

Query: 28  ELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESLQNFSSLPLTIAEELFSSC--- 84
           ELL T KR+ +TC  L AV  + CI CELQLAGPEYE  Q  SSL   +A ELF  C   
Sbjct: 162 ELLHTRKRQNETCERLNAVLGDSCIKCELQLAGPEYEHNQGISSLSPVLANELFQ-CELS 220

Query: 85  -----TQAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIA 139
                +QA+  D    KKA+  +DN LS AHTLLQIQC D KGL YDI+RT KD + +I+
Sbjct: 221 DNDVRSQALSPDMKKLKKANAALDNSLSQAHTLLQIQCADHKGLLYDIMRTLKDMNFKIS 280

Query: 140 YGRFSSSVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTEL 199
           YGRF  +V G+R++D+FIQQ DGKKI+DP+ Q  LCSRLK EMLHP RV + ++GPDTEL
Sbjct: 281 YGRFLPNVMGYRDLDIFIQQKDGKKILDPEKQNALCSRLKLEMLHPLRVTIADRGPDTEL 340

Query: 200 LVANPVELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVP 259
           LVANPVEL G GRPRVFYDVT ALKTLGICIFSA++GR+   + +WEVYRFLLDENCE  
Sbjct: 341 LVANPVELSGNGRPRVFYDVTFALKTLGICIFSAEVGRYLASEHEWEVYRFLLDENCEFQ 400

Query: 260 IASAKSRKQIVDRVRKTLMGW 280
           +    +R QIV RVR+TLMGW
Sbjct: 401 LTGVAARNQIVSRVRRTLMGW 421


>IMGA|Medtr7g124000.1 Amino acid-binding ACT
           chr07_pseudomolecule_IMGAG_V3 29027468-29030623 E
           EGN_Mt090430 20090702
          Length = 405

 Score =  256 bits (653), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 137/255 (53%), Positives = 171/255 (67%), Gaps = 11/255 (4%)

Query: 27  RELLLTEKRRVDTCRHLFAVFKEYCISCELQLAGPEYESL-QNFSSLPLTIAEELFSSCT 85
           RELL TEKR+ DT   L  V +++  + +++L GPE  +  Q  SSLP  I +       
Sbjct: 160 RELLHTEKRKDDTIEKLTTVLEDFFTTIDIELVGPETTAFSQPSSSLPNAITDVF----- 214

Query: 86  QAILMDTSSSKKASVTVDNHLSPAHTLLQIQCIDQKGLFYDILRTSKDCDIQIAYGRFSS 145
             +   TS+S   S+ +DN LSPAHTL+QI C D KGL YDI+RT KD +IQI+YGRFS 
Sbjct: 215 -DLQSGTSTSDSVSIVMDNTLSPAHTLVQIMCQDHKGLLYDIMRTLKDFNIQISYGRFSK 273

Query: 146 SVKGHRNVDLFIQQSDGKKIIDPKLQLTLCSRLKAEMLHPFRVIVVNQGPDTELLVANPV 205
             +G   +DLFI Q DGKKI+DP  + +L SRLK E+L P RV VV++GPDT+LLVANPV
Sbjct: 274 KPRGKCEIDLFIMQVDGKKIVDPSKKESLSSRLKTELLRPLRVAVVSRGPDTQLLVANPV 333

Query: 206 ELCGKGRPRVFYDVTLALKTLGICIFSAKIGRHSTEDRQWEVYRFLLDENCEVPIASAKS 265
           EL GKGRP VFYD+TLALK LG+CIFSA++GRH   DR+ EVYR LLDE   +       
Sbjct: 334 ELSGKGRPLVFYDITLALKMLGLCIFSAEVGRHVIGDRECEVYRVLLDEGEGLSFP---- 389

Query: 266 RKQIVDRVRKTLMGW 280
           R +I   V K LMGW
Sbjct: 390 RNKIEKGVWKKLMGW 404