Jatropha Genome Database

JcCB0550111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0550111.10 + phase: 0 /partial
         (478 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g025300.1 Sodium/calcium exchanger membrane region ch...   610   e-175
IMGA|Medtr7g103490.1 Sodium/calcium exchanger membrane region ch...   338   3e-93
IMGA|Medtr7g139480.1 Sodium/calcium exchanger membrane region ch...   102   6e-22

>IMGA|Medtr8g025300.1 Sodium/calcium exchanger membrane region
           chr08_pseudomolecule_IMGAG_V3 5035107-5029674 E
           EGN_Mt090430 20090702
          Length = 770

 Score =  610 bits (1572), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/479 (63%), Positives = 371/479 (77%), Gaps = 1/479 (0%)

Query: 1   MGTWLLALFYLLGNTAADYFCCSLEKLSNLLKLPPAVAGVTLLPLGNGAPDVFASIAAFV 60
           +G WL ALFYLLGNTAADYFC SLE LS LLKLPP VAGV LLPLGNGAPDVFASIA+FV
Sbjct: 147 LGVWLAALFYLLGNTAADYFCPSLEHLSRLLKLPPTVAGVVLLPLGNGAPDVFASIASFV 206

Query: 61  GKNAGAVGLNSVLGGAVFITCIVVGVVSLCVAERRIQIDRACFIRDICFFMFTLLSLGTL 120
           G + G VGLNSVLGGA+F+T +VVG VSLCVAER +Q+DR CFIRD+ FF+FT+ SL  +
Sbjct: 207 GTDTGEVGLNSVLGGALFVTTVVVGTVSLCVAERDVQVDRRCFIRDLSFFLFTIFSLLLI 266

Query: 121 LIVGNVSIGGAVAFVSIYVIYASAVAANEIFRKHAWRLRLNAIKPLLPVKGSIFSHESEE 180
           L VG + IG A+ FVSIYV+YA  VAANEI RKHA RL+L+++ P+LPV+GS+FS  SEE
Sbjct: 267 LFVGKIGIGAAIGFVSIYVVYAFIVAANEILRKHARRLKLDSVTPMLPVQGSVFSIGSEE 326

Query: 181 DDSVNASLLESDSKGDVPHLQNKLPHWMWASNVAIYSDEVMK-ESPDDPKDVWGWNEEET 239
           D ++ +SLL+ D++ D P L   LP WMW+SNVAIYS++  K    DD +  WGW++   
Sbjct: 327 DTTIYSSLLDLDTESDPPRLPPSLPQWMWSSNVAIYSNQASKIYHLDDERPPWGWSDGTP 386

Query: 240 VNGWXXXXXXXXXXXXEMPXXXXXXXXIPIVEEERWSKGYAVASATLAPILLALLWNTKD 299
            N              EMP        IP+V +E WSK + VASA+LAPILLA LW+T+D
Sbjct: 387 ENTRSSFSVSKLFLLMEMPLAIPRRLTIPMVHDEVWSKPFGVASASLAPILLAFLWSTQD 446

Query: 300 NVSILNREISYFLGVASGCVFGVLAYLYTKADEPPRKFIFPWVLGGFFMSIIWFYIVANE 359
           NVS  +  ++Y  G++ G   G+LAY YT +D PP +++ PWVLGGF MSI+WFYI+ANE
Sbjct: 447 NVSYTSIILAYCFGISVGSTLGILAYKYTVSDRPPSQYLIPWVLGGFVMSIVWFYIIANE 506

Query: 360 LVALLVAYGVIFGINPSLLGLTVLAWGNSMGDLMSNVALATNGGDSLQIAMSGCYAGPMF 419
           LVALLVA+G++FGINPS+LGLTVLAWGNSMGDLMSNVALA  GGD +QIA+SGCYAGPMF
Sbjct: 507 LVALLVAFGLMFGINPSILGLTVLAWGNSMGDLMSNVALALEGGDGVQIALSGCYAGPMF 566

Query: 420 NTLVGLGLSMLLGAWSDRPRPYKVPEDSSLFYTMGFLMLGLIWSLVVLPRNDMRPNKIL 478
           NTLVGLG S+LLGAWS +P  Y VP+D SLFYTMGFL+ GL+W+LVVLPRN+M P ++L
Sbjct: 567 NTLVGLGFSLLLGAWSKKPSSYVVPKDGSLFYTMGFLITGLLWALVVLPRNNMHPTRML 625


>IMGA|Medtr7g103490.1 Sodium/calcium exchanger membrane region
           chr07_pseudomolecule_IMGAG_V3 23235234-23233317 E
           EGN_Mt090430 20090702
          Length = 589

 Score =  338 bits (867), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 196/465 (42%), Positives = 275/465 (59%), Gaps = 36/465 (7%)

Query: 13  GNTAADYFCCSLEKLSNLLKLPPAVAGVTLLPLGNGAPDVFASIAAFVGKNAGAVGLNSV 72
            NTA++YFC SL+ LS +L+L P +AGVTLL LGNGA DVFA++ +F G     +G N+V
Sbjct: 122 ANTASEYFCPSLDNLSKVLRLSPTIAGVTLLSLGNGANDVFATLVSFKGNGTQGIGFNTV 181

Query: 73  LGGAVFITCIVVGVVSLCVAERRIQIDRACFIRDICFFMFTLLSLGTLLIVGNVSIGGAV 132
           LGGA FI+C+VVG++S+ V  R I++ ++  IRD+CF +F L+ L ++ I G +++  AV
Sbjct: 182 LGGASFISCVVVGIISISVRHREIRVQKSALIRDVCFLLFVLVCLFSVFINGEINVVVAV 241

Query: 133 AFVSIYVIYASAVAANEIFRKHAWRLRLNAIKPLLPVKGSIFSHESEEDDSVNASLLESD 192
            F  +YV+Y + V      RK                         +EDD       +S 
Sbjct: 242 GFCLMYVVYVAIVYVTSSKRKGV----------------------CDEDD---VDYGDSR 276

Query: 193 SKGDVPHLQNKLPHWMWASNVAIYSDEV-MKESPDDPKDVWGWNEEETVNGWXXXXXXXX 251
             G+   L   L  +M    V ++S+   ++E     +      E+ ++           
Sbjct: 277 IHGNGNDLDVPLLGFMEKGMVQVHSNSNGLQECEFKIEKNISCCEKSSI-------FRML 329

Query: 252 XXXXEMPXXXXXXXXIPIVEEERWSKGYAVASATLAPILLALLWNTKDNVSILNRE--IS 309
               +MP        IP+V EE+WSK YAV+SA L+P+LLA LW      S  N    I 
Sbjct: 330 LYVLDMPLYLPRRLTIPVVCEEKWSKAYAVSSAILSPLLLAFLWIPYKENSFSNSSSLIV 389

Query: 310 YFLGVASGCVFGVLAYLYTKADEPPRKFIFPWVLGGFFMSIIWFYIVANELVALLVAYGV 369
           Y +G+  G + GV A   T+A  PPRKF+ PW+  GF MS+ W YI A ELV LLV+ G 
Sbjct: 390 YGIGLLVGIILGVTAIFTTEASNPPRKFLLPWLAAGFMMSVTWSYISAQELVGLLVSLGF 449

Query: 370 IFGINPSLLGLTVLAWGNSMGDLMSNVALATNGG-DSLQIAMSGCYAGPMFNTLVGLGLS 428
           I G+NPS+LGLTVLAWGNS+GDL++N+ +A NGG +  QIA+SGCYAGP+FNT+VGLGLS
Sbjct: 450 ICGVNPSILGLTVLAWGNSIGDLVTNLTMALNGGPEGAQIAISGCYAGPIFNTVVGLGLS 509

Query: 429 MLLGAWSDRPRPYKVPEDSSLFYTMGFLMLGLIWSLVVLPRNDMR 473
           ++   WS+ P    +P D  L+ T+ FL++GLIW+LVVL R DM+
Sbjct: 510 LVTSTWSEYPSSIVIPRDPYLWETLAFLVVGLIWALVVLIRRDMK 554


>IMGA|Medtr7g139480.1 Sodium/calcium exchanger membrane region
           chr07_pseudomolecule_IMGAG_V3 33391264-33388617 E
           EGN_Mt090430 20090702
          Length = 518

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 104/196 (53%), Gaps = 13/196 (6%)

Query: 256 EMPXXXXXXXXIPIVEEERWSKGYAVASATLAPILLALLWNTKDNVSILNREISYFL--- 312
           E+P        IP     +WS+ YA A+  L P  LALL+     V  LN  I + L   
Sbjct: 270 ELPVSTFLRLTIPQPAPLQWSRFYASANIALCP--LALLYACNSFVP-LNHPIVFLLPNT 326

Query: 313 -----GVASGCVFGVLAYLYTKADEPPRKFIFPWVLGGFFMSIIWFYIVANELVALLVAY 367
                 V     F +    +    EPP+    P V+  F MS+ W    A ELV  L A 
Sbjct: 327 LFPLWSVVFMTSFSLAFLHFVLEKEPPKAEHLPVVVVAFVMSVFWISTTAGELVNCLEAL 386

Query: 368 GVIFGINPSLLGLTVLAWGNSMGDLMSNVALATNGGDSLQIAMSGCYAGPMFNTLVGLGL 427
           G +  +  + LGLTVLAWGNS+GDL+++VA+A  G  ++  AM+GC+AGPMFN LVGLG 
Sbjct: 387 GTLLKLPQAFLGLTVLAWGNSVGDLVADVAVAKAGHPAM--AMAGCFAGPMFNMLVGLGT 444

Query: 428 SMLLGAWSDRPRPYKV 443
           ++++   +  P+ Y++
Sbjct: 445 ALVIQTTNIYPKAYEL 460



 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 7/109 (6%)

Query: 5   LLALFYLLGNTAADYFCCSLEKLSNLLKLPPAVAGVTLLPLGNGAPDVFASIAAFVGKNA 64
           L+  FY+L  TA+ +F     KL++ L L P++A VTLL LGNG+PDVF+S+AA     A
Sbjct: 78  LILHFYILIKTASHHFSIVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAAL---RA 134

Query: 65  GA--VGLNSVLGGAVFITCIVVGVVSLCVAERRIQIDRACFIRDICFFM 111
           G    G  ++L    F++ +VVG V++  A     +D A F+RD+ F++
Sbjct: 135 GQYRTGFGAILSAGAFVSALVVGFVAIYSAP--FPVDPAPFVRDVLFYL 181