Jatropha Genome Database
- JcCB0549901.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0549901.10 + phase: 1 /partial
(166 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr1g143580.1 Pentatricopeptide repeat chr01_pseudomolecu... 137 2e-33
IMGA|Medtr7g015600.1 Smr protein/MutS2 C-terminal chr07_pseudomo... 52 1e-07
IMGA|Medtr4g100840.1 Pentatricopeptide repeat chr04_pseudomolecu... 52 2e-07
IMGA|Medtr3g138450.1 Pentatricopeptide repeat chr03_pseudomolecu... 52 2e-07
IMGA|Medtr4g042010.1 Pentatricopeptide repeat chr04_pseudomolecu... 52 2e-07
IMGA|Medtr7g015630.1 Smr protein/MutS2 C-terminal chr07_pseudomo... 51 2e-07
IMGA|Medtr7g015730.1 Pentatricopeptide repeat chr07_pseudomolecu... 51 3e-07
IMGA|Medtr8g148450.1 Smr protein/MutS2 C-terminal chr08_pseudomo... 50 4e-07
IMGA|Medtr5g102690.1 Pentatricopeptide repeat chr05_pseudomolecu... 50 5e-07
IMGA|Medtr3g123920.1 Pentatricopeptide repeat chr03_pseudomolecu... 50 6e-07
IMGA|AC233662_58.1 Pentatricopeptide repeat AC233662.1 266570-26... 49 1e-06
IMGA|Medtr4g098380.1 Pentatricopeptide repeat chr04_pseudomolecu... 48 3e-06
IMGA|Medtr7g107370.1 Pentatricopeptide repeat chr07_pseudomolecu... 47 3e-06
IMGA|Medtr4g092860.1 Pentatricopeptide repeat chr04_pseudomolecu... 47 4e-06
IMGA|Medtr1g121960.1 Pentatricopeptide repeat chr01_pseudomolecu... 47 5e-06
IMGA|Medtr5g006800.1 Pentatricopeptide repeat chr05_pseudomolecu... 46 7e-06
IMGA|Medtr5g085730.1 Pentatricopeptide repeat chr05_pseudomolecu... 46 7e-06
IMGA|Medtr4g157210.1 Pentatricopeptide repeat chr04_pseudomolecu... 46 7e-06
IMGA|Medtr2g073980.1 Pentatricopeptide repeat chr02_pseudomolecu... 46 8e-06
IMGA|Medtr5g085050.1 Pentatricopeptide repeat chr05_pseudomolecu... 46 9e-06
>IMGA|Medtr1g143580.1 Pentatricopeptide repeat
chr01_pseudomolecule_IMGAG_V3 31747847-31742900 E
EGN_Mt090430 20090702
Length = 553
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 81/96 (84%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYGTLIKGYAK D+E +M+KYEEM G+KANQTI TTIMDAHGKN DF SAV+W+KE
Sbjct: 421 VTYGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAHGKNGDFDSAVNWFKE 480
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLVGYS 96
M +G+ PDQKAKN+LLSLAKT ++ +EAN+LV +S
Sbjct: 481 MALNGLLPDQKAKNILLSLAKTEEDIKEANELVLHS 516
>IMGA|Medtr7g015600.1 Smr protein/MutS2 C-terminal
chr07_pseudomolecule_IMGAG_V3 3954995-3951849 E
EGN_Mt090430 20090702
Length = 849
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY T+I G AK LE+ + YEEM+L + ++ + T++ + K F A+ KE
Sbjct: 355 VTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKE 414
Query: 61 MERHGVPPDQKAKNVLLS 78
ME G+ D N LLS
Sbjct: 415 MESCGMKRDVVTYNALLS 432
>IMGA|Medtr4g100840.1 Pentatricopeptide repeat
chr04_pseudomolecule_IMGAG_V3 21675500-21672831 E
EGN_Mt090430 20090702
Length = 889
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY LI+G+ K+ L K EM +G+ + ++TI+ H ++ D G+AV + M
Sbjct: 779 TYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTM 838
Query: 62 ERHGVPPDQKAKNVLL 77
R GV PD A N+L+
Sbjct: 839 LRKGVEPDSVAFNLLI 854
>IMGA|Medtr3g138450.1 Pentatricopeptide repeat
chr03_pseudomolecule_IMGAG_V3 35394297-35398369 E
EGN_Mt090430 20090702
Length = 1121
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TYG LI G K E MK +EEM G N I+ +++ GK+ + A +K+M
Sbjct: 903 TYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKM 962
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQ 91
+ G+ PD K+ +L+ +EA Q
Sbjct: 963 VKEGIRPDLKSYTILVECLCITGRIDEAVQ 992
Score = 45.8 bits (107), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
+Y L+ G E ++ +E+M+ +G N + ++DAHGK+K Y EM
Sbjct: 798 SYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEM 857
Query: 62 ERHGVPPDQKAKNVLLS 78
G P+ N+++S
Sbjct: 858 RSRGCEPNAITHNIIIS 874
>IMGA|Medtr4g042010.1 Pentatricopeptide repeat
chr04_pseudomolecule_IMGAG_V3 10055950-10051878 E
EGN_Mt090430 20090702
Length = 1121
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TYG LI G K E MK +EEM G N I+ +++ GK+ + A +K+M
Sbjct: 903 TYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKM 962
Query: 62 ERHGVPPDQKAKNVLLSLAKTADEKEEANQ 91
+ G+ PD K+ +L+ +EA Q
Sbjct: 963 VKEGIRPDLKSYTILVECLCITGRIDEAVQ 992
Score = 45.8 bits (107), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
+Y L+ G E ++ +E+M+ +G N + ++DAHGK+K Y EM
Sbjct: 798 SYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEM 857
Query: 62 ERHGVPPDQKAKNVLLS 78
G P+ N+++S
Sbjct: 858 RSRGCEPNAITHNIIIS 874
>IMGA|Medtr7g015630.1 Smr protein/MutS2 C-terminal
chr07_pseudomolecule_IMGAG_V3 3963835-3967136 E
EGN_Mt090430 20090702
Length = 890
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY ++ GYAK LE+ + YEEM+L V ++ + T++ + K + A+ KE
Sbjct: 390 VTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKE 449
Query: 61 MERHGVPPDQKAKNVLLS 78
MER G+ D N LLS
Sbjct: 450 MERSGINRDVVTYNALLS 467
>IMGA|Medtr7g015730.1 Pentatricopeptide repeat
chr07_pseudomolecule_IMGAG_V3 4028933-4023938 E
EGN_Mt090430 20090702
Length = 881
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+ +I YA E+ +K +EEMQL VK N TIF +++ A + +++E
Sbjct: 641 VTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFRE 700
Query: 61 MERH-GVPPDQKAKNVLLSLAKTADEKEEANQLV 93
M H G+ P + + ++ L + + EA +L+
Sbjct: 701 MRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELI 734
>IMGA|Medtr8g148450.1 Smr protein/MutS2 C-terminal
chr08_pseudomolecule_IMGAG_V3 36720898-36718691 E
EGN_Mt090430 20090702
Length = 706
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
T+ TLIK Y + + + YEEM+ GVK N ++ T++DA G+ K A + YKEM
Sbjct: 288 TFSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEM 347
Query: 62 ERHGVPPDQKAKNVLL 77
+ + P++ LL
Sbjct: 348 INNDILPNRATYASLL 363
>IMGA|Medtr5g102690.1 Pentatricopeptide repeat
chr05_pseudomolecule_IMGAG_V3 41118954-41116107 E
EGN_Mt090430 20090702
Length = 906
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYG+++ G AKI L+ +EE + GV N I+++++D GK A +E
Sbjct: 658 VTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEE 717
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEA 89
+ + G+ P+ N LL A+E +EA
Sbjct: 718 LMQKGLTPNSYTWNCLLDALVKAEEIDEA 746
>IMGA|Medtr3g123920.1 Pentatricopeptide repeat
chr03_pseudomolecule_IMGAG_V3 31287667-31285214 E
EGN_Mt090430 20090702
Length = 796
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
Y +LI GY K DL + YE+M L G+K N I + I+ + + V +KE+
Sbjct: 337 VYSSLICGYCKTHDLVKALDLYEDMILKGIKTNCVIVSCILHCFAEMGEDSRVVDTFKEV 396
Query: 62 ERHGVPPDQKAKNVLL-SLAKTADEKEEANQL 92
++ GV D A N++ SL K E A L
Sbjct: 397 KQSGVFLDGVAYNIVFDSLFKLGKMDEVAGML 428
>IMGA|AC233662_58.1 Pentatricopeptide repeat AC233662.1
266570-264088 E EGN_Mt090430 20090702
Length = 718
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
V Y TLI G K + +E+ + +++M+L GV + + T++D KNK A +
Sbjct: 439 VVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQ 498
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
M G+ PD+ N LL+ + E+A +V
Sbjct: 499 MIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIV 531
>IMGA|Medtr4g098380.1 Pentatricopeptide repeat
chr04_pseudomolecule_IMGAG_V3 21151878-21142992 E
EGN_Mt090430 20090702
Length = 705
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+GTL+K AK +E + Y+ +Q +K + ++T +++ + D+ A S Y +
Sbjct: 225 VTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSCSQTGDWEFARSVYDD 284
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEA 89
M + GV PD+ + L+ +A A + E A
Sbjct: 285 MTQKGVLPDEMFMSALIDVAGHAKKLEAA 313
>IMGA|Medtr7g107370.1 Pentatricopeptide repeat
chr07_pseudomolecule_IMGAG_V3 25088643-25089722 H
EGN_Mt090430 20090702
Length = 359
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+ TLI G+ K L + + EM+L+ V N + T+++ G+ + + ++E
Sbjct: 130 VTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEE 189
Query: 61 MERHGVPPDQKAKN-VLLSLAKTADEKEEA 89
MER+ V D N ++L L K K+ A
Sbjct: 190 MERNKVKADILTYNGLILGLCKEGKTKKAA 219
>IMGA|Medtr4g092860.1 Pentatricopeptide repeat
chr04_pseudomolecule_IMGAG_V3 19508953-19507079 H
EGN_Mt090430 20090702
Length = 624
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VT+ TL++GY + + +E K +EM+ G+K + + T++ + K D A+ + E
Sbjct: 498 VTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDE 557
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
M G P N L+ E + A +L+
Sbjct: 558 MLSLGFDPTLLTYNALIQGYSKIGEADHAEELL 590
>IMGA|Medtr1g121960.1 Pentatricopeptide repeat
chr01_pseudomolecule_IMGAG_V3 26692128-26696815 H
EGN_Mt090430 20090702
Length = 765
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTYGTLI GY K + + +K +EEM+ +G+ A + TI+ + AV E
Sbjct: 492 VTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNE 551
Query: 61 MERHGVPPDQKAKNVLL 77
+ G+ PD+ N+++
Sbjct: 552 LLEKGLVPDESTSNIII 568
>IMGA|Medtr5g006800.1 Pentatricopeptide repeat
chr05_pseudomolecule_IMGAG_V3 843148-844925 E
EGN_Mt090430 20090702
Length = 553
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
VTY L+ GY K L +++YE M+ G+ + ++++M GK A + +
Sbjct: 343 VTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDD 402
Query: 61 MERHGVPPDQKAKNVLLSLAKTADEKEEANQLV 93
M + GV D N ++S A ++E A +L+
Sbjct: 403 MPKQGVVRDVVTYNTMISTACAHSKEETALRLL 435
>IMGA|Medtr5g085730.1 Pentatricopeptide repeat
chr05_pseudomolecule_IMGAG_V3 32767077-32765258 E
EGN_Mt090430 20090702
Length = 593
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
+TY LI G + DL+ K EM +G K ++ FTT+MD K+ D SA+
Sbjct: 367 ITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDR 426
Query: 61 MERHGVPPDQKAKNVLLS 78
M G+ D A L+S
Sbjct: 427 MVEEGIELDDVAFTALIS 444
>IMGA|Medtr4g157210.1 Pentatricopeptide repeat
chr04_pseudomolecule_IMGAG_V3 39147151-39149374 E
EGN_Mt090430 20090702
Length = 732
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
TY T++ G KI ++E +K EEM L+G + +TT+MDA+ K + A + M
Sbjct: 489 TYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIM 548
Query: 62 ERHGVPPDQKAKNVLLS 78
+ P NVL++
Sbjct: 549 LNKRLQPTLVTFNVLMN 565
>IMGA|Medtr2g073980.1 Pentatricopeptide repeat
chr02_pseudomolecule_IMGAG_V3 16806473-16808830 E
EGN_Mt090430 20090702
Length = 785
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 1 VTYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKE 60
+TY T+I Y K KD NM + +MQ G + + +++DA+GK+ + S K
Sbjct: 615 ITYNTIIDSYGKKKDFRNMSRTVRKMQFDGFSVSLEAYNSMLDAYGKDSQMDAFRSVLKM 674
Query: 61 MERHGVPPDQKAKNVLLSL 79
M+ D N+++++
Sbjct: 675 MKESNCASDLYTYNIVINI 693
>IMGA|Medtr5g085050.1 Pentatricopeptide repeat
chr05_pseudomolecule_IMGAG_V3 32459963-32457018 E
EGN_Mt090430 20090702
Length = 981
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 2 TYGTLIKGYAKIKDLENMMKKYEEMQLSGVKANQTIFTTIMDAHGKNKDFGSAVSWYKEM 61
YG LI G+A+ L+ ++ + MQ SG+ AN + TT+M ++ K D S YK+M
Sbjct: 607 VYGALINGFAEHGRLDEALQYFHLMQESGLSANLVVLTTLMKSYSKAGDLKGVKSIYKQM 666
Query: 62 ERHGVPPDQKAKNVLLS 78
+ D A++ +++
Sbjct: 667 QNMEGVLDLAARSSMIT 683