Jatropha Genome Database

JcCB0549541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549541.10 - phase: 0 /pseudo
         (417 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g157420.1 Orn/DAP/Arg decarboxylase 2 chr03_pseudomol...   360   1e-99
IMGA|Medtr5g022600.1 Diaminopimelate decarboxylase chr05_pseudom...    69   6e-12

>IMGA|Medtr3g157420.1 Orn/DAP/Arg decarboxylase 2
           chr03_pseudomolecule_IMGAG_V3 41516251-41514746 E
           EGN_Mt090430 20090702
          Length = 428

 Score =  360 bits (923), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 182/325 (56%), Positives = 232/325 (71%), Gaps = 6/325 (1%)

Query: 14  SSLKAISEASRLKGQQVVQIQ-KAALYSLIKSI--SDNQEEAEPFYLIDLGVVIRLMDKW 70
           ++LK I  AS +KG +V  +  +  +   I+SI  +   E   PF ++DL V+I LM+KW
Sbjct: 14  TNLKPIFCASGVKGNKVTTLSSEVTISDFIQSIIKTKPTENDSPFSVLDLRVIIDLMNKW 73

Query: 71  NQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVNPDRIVYANPCK 130
              LP VKPFYAVKCN   +L+ +LA+LG+NFDCAS+AEIE++L LGV+PD+I+YANPCK
Sbjct: 74  TTELPTVKPFYAVKCNPNISLIGTLASLGSNFDCASRAEIESVLSLGVSPDKIIYANPCK 133

Query: 131 SASHIKYAARVGVNLTTFDSKQEIDKIKKWHPKCELLLRLKVPSENSSWRS-FGNKYGAL 189
           S SHIKYAA VGVN+TTFD   E++KIKKWHPKCELLLR+K P E+S  RS  G KYGAL
Sbjct: 134 SESHIKYAASVGVNVTTFDCAGEVEKIKKWHPKCELLLRIK-PEEDSGARSCLGLKYGAL 192

Query: 190 TEEVASLLQHANQAGLKVVGVSFHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMHIL 249
             EV  LL+ A+ AGLKV GVSFH+GS  +D + YH AI  A+  F+TA +L MP M IL
Sbjct: 193 HNEVPELLKAADMAGLKVTGVSFHIGSGGADAKAYHGAILLAKEVFETASRLGMPKMKIL 252

Query: 250 NIGGGFRANPLFDEIGKTVNDSVQEFFPDELTSLTMIAEPGRYFVETAFILVTNVIGKRV 309
           +IGGGF +   FDE    VND+++  F ++   L +I EPGRYF ETAF L T VIGKRV
Sbjct: 253 DIGGGFTSGSKFDEAAFNVNDAIKTHFGND-EDLVVIGEPGRYFAETAFTLATKVIGKRV 311

Query: 310 RGEQIDYWIDDGVHGSFNLGAYDRA 334
           RGE  +YWIDDG++G+ N   +D A
Sbjct: 312 RGEMREYWIDDGIYGTLNNIVFDYA 336


>IMGA|Medtr5g022600.1 Diaminopimelate decarboxylase
           chr05_pseudomolecule_IMGAG_V3 8835936-8840655 E
           EGN_Mt090430 20090702
          Length = 483

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 24/289 (8%)

Query: 51  EAEPFYLIDLGVVIRLMDKWNQSLPNVKPF--YAVKCNTEPALLLSLATLGANFDCASQA 108
           E  PFYL     + R ++ +  +L  +     YA+K N    +L  L +LG      S  
Sbjct: 89  EKRPFYLYSKPQITRNVEAYKDALEGLTSIIGYAIKANNNYKILEHLRSLGCGAVLVSGN 148

Query: 109 EIETILGLGVNPDRIVYANPCKSASHIKYAARVGVNLTTFDSKQEIDKI----KKWHPKC 164
           E++  L  G +P R ++    K    +  AA  GV     DS+ +++ I    +    + 
Sbjct: 149 ELKLALRAGFDPTRCIFNGNGKILEDLVLAAEAGV-FVNIDSEFDLENIVAAARIAGKRV 207

Query: 165 ELLLRLK--VPSENSSWRSFGN---KYGALTEEVASLLQHANQ--AGLKVVGVSFHVGSI 217
            +LLR+   V  +   + + GN   K+G   E++   L    +    LK+VG   H+GS 
Sbjct: 208 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKEHPVELKLVGAHCHLGST 267

Query: 218 ASDPQVYHSAIATARFAFDTAIKLEMPAMHILNIGGG-----FRANPLFDEIGKTVNDSV 272
            +   ++  A AT    +   I+ +   +  LNIGGG     + A  +  +  + + D+V
Sbjct: 268 ITKVDIFRDA-ATIMVNYIDEIRAQGFEVDYLNIGGGLGIDYYHAGAVLPK-PRDLIDTV 325

Query: 273 QEFFPDELTSLTMIAEPGRYFVETAFILVTNVIGKRVRGEQIDYWIDDG 321
           +E        L +I EPGR  +     LV+ V G +  G + ++ + DG
Sbjct: 326 RELVLSR--GLKLIIEPGRSLIANTCCLVSRVTGVKTNGSK-NFIVIDG 371