Jatropha Genome Database

JcCB0549071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0549071.10 + phase: 2 /partial
         (186 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g081040.1 Acyl-CoA dehydrogenase, N-terminal; chr04_p...    81   4e-16
IMGA|Medtr4g080840.1 Acyl-CoA dehydrogenase, N-terminal; chr04_p...    81   4e-16
IMGA|Medtr4g080840.2 Acyl-CoA dehydrogenase, N-terminal; chr04_p...    81   4e-16

>IMGA|Medtr4g081040.1 Acyl-CoA dehydrogenase, N-terminal;
           chr04_pseudomolecule_IMGAG_V3 16808110-16814069 E
           EGN_Mt090430 20090702
          Length = 402

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%)

Query: 59  IATAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDY 118
           IA  E++R   S       HS+L +  +   GS  QKQKYLP L     +   A++EP+ 
Sbjct: 107 IAMEEISRASGSVGLSYGAHSNLCINQLVRNGSHEQKQKYLPKLISGDHVGALAMSEPNS 166

Query: 119 GSDASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFARNTSTNQINGYVSY 172
           GSD  ++K  A++V+GG+VL G K W  N   A  LV++A+  +T    G  ++
Sbjct: 167 GSDVVSMKCKADRVDGGYVLNGNKMWCTNGPTAQTLVVYAKTDATAGSKGITAF 220


>IMGA|Medtr4g080840.1 Acyl-CoA dehydrogenase, N-terminal;
           chr04_pseudomolecule_IMGAG_V3 16682661-16688651 F
           EGN_Mt090430 20090702
          Length = 417

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%)

Query: 59  IATAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDY 118
           IA  E++R   S       HS+L +  +   GS  QKQKYLP L     +   A++EP+ 
Sbjct: 107 IAMEEISRASGSVGLSYGAHSNLCINQLVRNGSHEQKQKYLPKLISGDHVGALAMSEPNS 166

Query: 119 GSDASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFARNTSTNQINGYVSY 172
           GSD  ++K  A++V+GG+VL G K W  N   A  LV++A+  +T    G  ++
Sbjct: 167 GSDVVSMKCKADRVDGGYVLNGNKMWCTNGPTAQTLVVYAKTDATAGSKGITAF 220


>IMGA|Medtr4g080840.2 Acyl-CoA dehydrogenase, N-terminal;
           chr04_pseudomolecule_IMGAG_V3 16682661-16688651 F
           EGN_Mt090430 20090702
          Length = 332

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 62/114 (54%)

Query: 59  IATAEVARVDASCSTFILVHSSLAMLTIALCGSEVQKQKYLPSLAQLSTIACWALTEPDY 118
           IA  E++R   S       HS+L +  +   GS  QKQKYLP L     +   A++EP+ 
Sbjct: 107 IAMEEISRASGSVGLSYGAHSNLCINQLVRNGSHEQKQKYLPKLISGDHVGALAMSEPNS 166

Query: 119 GSDASALKTTANKVEGGWVLEGQKRWIGNSTFADLLVIFARNTSTNQINGYVSY 172
           GSD  ++K  A++V+GG+VL G K W  N   A  LV++A+  +T    G  ++
Sbjct: 167 GSDVVSMKCKADRVDGGYVLNGNKMWCTNGPTAQTLVVYAKTDATAGSKGITAF 220