Jatropha Genome Database

JcCB0548251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0548251.10 + phase: 1 /pseudo/partial
         (228 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g096650.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...   251   2e-67
IMGA|Medtr4g124940.1 Cyclin-like F-box chr04_pseudomolecule_IMGA...   234   3e-62
IMGA|Medtr5g074580.1 Leucine-rich repeat 2 chr05_pseudomolecule_...   211   2e-55
IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related ch...   200   5e-52
IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing su...    89   3e-18
IMGA|Medtr5g089200.1 Leucine-rich repeat 2 chr05_pseudomolecule_...    88   3e-18
IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing su...    84   4e-17
IMGA|Medtr1g023840.1 Cyclin-like F-box chr01_pseudomolecule_IMGA...    51   4e-07
IMGA|Medtr2g026110.1 Cyclin-like F-box chr02_pseudomolecule_IMGA...    47   5e-06

>IMGA|Medtr7g096650.1 Cyclin-like F-box
           chr07_pseudomolecule_IMGAG_V3 21663069-21659617 E
           EGN_Mt090430 20090702
          Length = 571

 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/219 (55%), Positives = 157/219 (71%), Gaps = 3/219 (1%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
            +++  ALERLV R PNL++LRLNR+VP+D L  IL+RAPQL++LG G++  +L  D ++
Sbjct: 191 GDINLGALERLVSRSPNLKSLRLNRSVPVDALQRILTRAPQLMDLGIGSFFHDLNSDAYA 250

Query: 61  SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYAT-IQSPDVIKLVSQCQ 119
                   CK + SLSGF +V P  L AIYPIC  LTSLNLSYA  I   ++IKL+  C 
Sbjct: 251 MFKATILKCKSITSLSGFLEVAPFSLAAIYPICQNLTSLNLSYAAGILGIELIKLIRHCG 310

Query: 120 SLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKL 179
            LQRLW++D I D+GL  +A+ CK+L+ELRVFPS PF  +  V  TE+GLV++S GCPKL
Sbjct: 311 KLQRLWIMDRIGDLGLGVVASTCKELQELRVFPSAPFGNQAAV--TEKGLVAISMGCPKL 368

Query: 180 QSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
            S+LYFCHQMTN ALI VA+N PN  RFRLCI++   PD
Sbjct: 369 HSLLYFCHQMTNAALIAVAKNCPNFIRFRLCILDATKPD 407


>IMGA|Medtr4g124940.1 Cyclin-like F-box
           chr04_pseudomolecule_IMGAG_V3 29352485-29348732 F
           EGN_Mt090430 20090702
          Length = 586

 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/218 (51%), Positives = 150/218 (68%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
           ++V+F ALE+LV RC +L+TL++N++V L++L  +L RAPQL ELGTG++S EL    +S
Sbjct: 211 NDVNFDALEKLVARCNSLKTLKVNKSVTLEQLQRLLVRAPQLCELGTGSFSQELTGQQYS 270

Query: 61  SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
            L  AF+ C+ L +LSG W     Y   +YP+C+ LT LN SYA + S  + KL+ +C +
Sbjct: 271 ELERAFNNCRSLHTLSGLWVASAQYHQVLYPVCTNLTFLNFSYAPLDSEGLSKLLVRCPN 330

Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQ 180
           L+RLWVLD +ED GLEA+ ++C  L ELRVFP +PF       +TE G ++VSEGC KL 
Sbjct: 331 LRRLWVLDTVEDKGLEAVGSYCPLLEELRVFPGDPFEEGAAHGVTESGFIAVSEGCRKLH 390

Query: 181 SVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPD 218
            VLYFC QMTN A+ TV  N P+ T FRLCIM P  PD
Sbjct: 391 YVLYFCRQMTNAAVATVVENCPDFTHFRLCIMTPGQPD 428


>IMGA|Medtr5g074580.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 26963413-26966403 E
           EGN_Mt090430 20090702
          Length = 617

 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 145/217 (66%), Gaps = 1/217 (0%)

Query: 3   VSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFSSL 62
           V+F ALERLV R PNL+ LRLNR+V + +L  ++ RAPQL  LGTG++ +    D     
Sbjct: 244 VNFEALERLVARSPNLKKLRLNRSVSMVQLHRLMLRAPQLTHLGTGSFCANENVDQEPDY 303

Query: 63  SGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQSLQ 122
           + AF+ C+ L  LSGF ++ P YLPAI+P+C+ LTSLN SYA + +  +  ++  C  LQ
Sbjct: 304 ASAFAACRSLVCLSGFREIWPDYLPAIFPVCANLTSLNFSYADVNAEQLKSVICHCHKLQ 363

Query: 123 RLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKLQSV 182
            LWVLD I D GL+A+A  CKDLRELRVFP +    E    ++E G  ++S+GC KL+S+
Sbjct: 364 ILWVLDSICDEGLQAVAATCKDLRELRVFPVDARE-ETEGPVSEVGFEAISQGCRKLESI 422

Query: 183 LYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPDT 219
           L+FC  MTN A+I +++N P++  FRLCI+    PD 
Sbjct: 423 LFFCQTMTNAAVIAMSKNCPDLVVFRLCIIGVYRPDA 459


>IMGA|Medtr3g148840.1 Protein AUXIN SIGNALING F-BOX 3, related
           chr03_pseudomolecule_IMGAG_V3 38779268-38775322 E
           EGN_Mt090430 20090702
          Length = 594

 Score =  200 bits (508), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/228 (47%), Positives = 147/228 (64%), Gaps = 14/228 (6%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
           S ++F +LERLV R P+L+ LRLNR + L +L  ++ +AP L  LGTG++   + P+   
Sbjct: 214 SPINFESLERLVARSPSLKRLRLNRHIKLSQLYRLMYKAPHLTHLGTGSF---VVPEDTM 270

Query: 61  SLSGA--------FSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVI 112
           ++ G         F+  K L SLSGF D +P YLPAIYP+C+ LTSLN SYA I +  + 
Sbjct: 271 NVVGDDELIYETPFAASKSLVSLSGFRDTLPEYLPAIYPVCANLTSLNFSYADIDTDQIK 330

Query: 113 KLVSQCQSLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPF-AVEPNVSLTEQGLVS 171
            +VS+C  LQ LWVLD I D GL+ +A  CKDLRELRVFP      VE  VS  E G  +
Sbjct: 331 SIVSRCHKLQTLWVLDAIFDEGLQVVAETCKDLRELRVFPLHAREGVEGPVS--EVGFEA 388

Query: 172 VSEGCPKLQSVLYFCHQMTNDALITVARNRPNMTRFRLCIMEPRTPDT 219
           +S+GC KLQS+L+FC +MTN A++ ++ N P++  FRLCI+    PD 
Sbjct: 389 ISQGCRKLQSILFFCTRMTNAAVVAMSHNCPDLVVFRLCIIGQYRPDA 436


>IMGA|Medtr3g093160.1 Leucine-rich repeat, cysteine-containing
           subtype chr03_pseudomolecule_IMGAG_V3 22073407-22070105
           E EGN_Mt090430 20090702
          Length = 601

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 12/223 (5%)

Query: 2   EVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFSS 61
           EV    LE L   CPNL ++++     LD L N    A  L E   GTY+ E  P+ +++
Sbjct: 211 EVKVQDLELLARNCPNLVSVKITDCEILD-LRNFFRNATALEEFSGGTYNEE--PERYTA 267

Query: 62  LSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQSL 121
           L      C+      G   +    LP  +P  +GL  L+L YA + + D   L+ +C +L
Sbjct: 268 LMLPAKLCR-----LGLTYIGKNELPIAFPYAAGLKKLDLLYAMLDTEDHCMLIQKCPNL 322

Query: 122 QRLWVLDYIEDIGLEALATFCKDLRELRV--FPSEPFAVEPNVSLTEQGLVSVSEGCPKL 179
           + L   + I D GL  L   CK L+ LR+     +    +   +++ +GL+++S+GC +L
Sbjct: 323 EVLETRNVIGDRGLVILGHCCKKLKRLRIERGDDDQGLEDEEGTVSHRGLIALSQGCTEL 382

Query: 180 QSVLYFCHQMTNDALITVARNRPNMTRFRLCIME--PRTPDTP 220
           + +  +   +TN +L  +  +   +  FRL +++   R  D P
Sbjct: 383 EYLAVYVSDITNASLEHIGTHLKKLCDFRLVLLDHAERISDLP 425


>IMGA|Medtr5g089200.1 Leucine-rich repeat 2
           chr05_pseudomolecule_IMGAG_V3 34621888-34616774 E
           EGN_Mt090430 20090702
          Length = 587

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 12/224 (5%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
           + +    LE L   CPNL ++++     L+ L N    A  L E   G+Y+ +  P+ ++
Sbjct: 194 ANIRIEDLELLAKNCPNLVSVKITDCEMLN-LVNFFRYASSLEEFCGGSYNED--PEKYA 250

Query: 61  SLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDVIKLVSQCQS 120
           ++S       +L  L G   +    +P  +P  S L  L+L YA + + D   L+ +C +
Sbjct: 251 AISLP----SKLSRL-GLTYIGKNEMPIAFPYASQLKKLDLLYAMLDTEDHCTLIEKCPN 305

Query: 121 LQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVS--LTEQGLVSVSEGCPK 178
           L+ L   + I D GLE LA  CK L+ LR+   +      +V   ++++GL+++S GCP+
Sbjct: 306 LEILESRNVIGDRGLEVLARCCKKLKRLRIERGDDDQGMEDVDGVVSQRGLIALSLGCPE 365

Query: 179 LQSVLYFCHQMTNDALITVARNRPNMTRFRLCIM--EPRTPDTP 220
           L+ +  +   +TN++L  ++ +  N+  FRL ++  E +  D P
Sbjct: 366 LEYMAVYVSDITNESLEHISTHLKNLCDFRLVLLDREEKITDLP 409


>IMGA|Medtr8g074230.1 Leucine-rich repeat, cysteine-containing
           subtype chr08_pseudomolecule_IMGAG_V3 14712347-14710032
           H EGN_Mt090430 20090702
          Length = 557

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 10/207 (4%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDRLANILSRAPQLVELGTGTYSSELRPDVFS 60
           S+++   LE L   CPNL ++++     LD L N    A  L E   G Y+ +  P+ ++
Sbjct: 205 SKINIEDLELLAKNCPNLASVKITDCEILD-LKNFFQYASSLEEFCGGFYNKD--PENYA 261

Query: 61  SLSGAFSGCKELKSLSGFWDVVPGYLPAIYP-ICSGLTSLNLSYATIQSPDVIKLVSQCQ 119
           ++  A      L  L G  ++    LP ++P + + L  L+L Y+T+   D   L+  C 
Sbjct: 262 AVLPA-----RLSRL-GLVEIRKDDLPIMFPSLVAQLKMLDLRYSTLDMEDHCTLIRLCP 315

Query: 120 SLQRLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKL 179
           +L+ L  +D I + GL  L  +C  L+ LR+        +    +T++GL+ +S GCP+L
Sbjct: 316 NLETLKSMDVIGNKGLIELGQYCTKLKRLRIETENERREDEEARVTQRGLIEISNGCPEL 375

Query: 180 QSVLYFCHQMTNDALITVARNRPNMTR 206
           + +      +TN ALI ++ +  N+ +
Sbjct: 376 EYISVNVSNITNQALIHISTHLKNLLK 402


>IMGA|Medtr1g023840.1 Cyclin-like F-box
           chr01_pseudomolecule_IMGAG_V3 5419157-5421369 E
           EGN_Mt090430 20090702
          Length = 547

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 18/151 (11%)

Query: 68  GCKELKSL-----SGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDV-IKLVSQCQSL 121
           G K LK+L     SG WD +  +      + S +  ++  +  +Q  D+ ++ +S C +L
Sbjct: 253 GAKNLKTLKLFRCSGDWDTL--FTLMAERVASMIVEVH--FERLQISDIGLQAISNCSNL 308

Query: 122 QRLWVLDYIE--DIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGLVSVSEGCPKL 179
           + L ++   E  D+GL A+A  CK LR+L +   +   +       ++GL++V++ CP L
Sbjct: 309 EILHLVKTPECTDMGLVAIAERCKLLRKLHIDGWKANRI------GDEGLIAVAKFCPNL 362

Query: 180 QSVLYFCHQMTNDALITVARNRPNMTRFRLC 210
           Q ++      T  +L  +A N PN+ R  LC
Sbjct: 363 QELVLIGVNPTRVSLEMLASNCPNLERLALC 393


>IMGA|Medtr2g026110.1 Cyclin-like F-box
           chr02_pseudomolecule_IMGAG_V3 7083652-7076263 E
           EGN_Mt090430 20090702
          Length = 610

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 30/221 (13%)

Query: 1   SEVSFSALERLVGRCPNLRTLRLNRTVPLDR-LANILSRAPQLVELG-------TGTYSS 52
           S V+   L  L  +C +L++L L      D+ LA +  R  QL +L        T T   
Sbjct: 151 SNVTSFGLSSLASKCASLKSLDLQGCYVGDQGLAAVGQRCKQLEDLNLRFCEGLTDTGLV 210

Query: 53  ELRPDVFSSL-SGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYATIQSPDV 111
           EL   V  SL S   + C ++  +S         + A+   C  L +L+L    + +  V
Sbjct: 211 ELALGVGKSLKSLGVAACAKITDIS---------MEAVASHCGSLETLSLDSEFVHNQGV 261

Query: 112 IKLVSQCQSLQ--RLWVLDYIEDIGLEALATFCKDLRELRVFPSEPFAVEPNVSLTEQGL 169
           + +   C  L+  +L  ++  +D  L+A+   C  L  L ++  + F        T++GL
Sbjct: 262 LAVAKGCPHLKSLKLQCINLTDD-ALKAVGVSCLSLELLALYSFQRF--------TDKGL 312

Query: 170 VSVSEGCPKLQSV-LYFCHQMTNDALITVARNRPNMTRFRL 209
            ++  GC KL+++ L  C+ +++  L  +A     +T   +
Sbjct: 313 RAIGNGCKKLKNLTLSDCYFLSDKGLEAIATGCKELTHLEV 353