Jatropha Genome Database

JcCB0545911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0545911.10 - phase: 0 /partial
         (102 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g017600.1 Cyclin-dependent kinase inhibitor chr05_pse...    87   1e-18
IMGA|CU571152_6.1 Cyclin-dependent kinase inhibitor CU571152.5 1...    82   9e-17
IMGA|Medtr7g064470.1 Cyclin-dependent kinase inhibitor chr07_pse...    69   6e-13
IMGA|Medtr4g129380.1 Cyclin-dependent kinase inhibitor chr04_pse...    69   8e-13
IMGA|Medtr1g087110.1 Cyclin-dependent kinase inhibitor chr01_pse...    54   2e-08

>IMGA|Medtr5g017600.1 Cyclin-dependent kinase inhibitor
           chr05_pseudomolecule_IMGAG_V3 6306558-6305110 E
           EGN_Mt090430 20090702
          Length = 183

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 9/103 (8%)

Query: 1   QAESVEVETSVYYSCRERRETTPSSQLRPESSDELDSIARPSPEANTLR-RSTAEKMPTE 59
           + ES +VETS   +C    E     ++    S+E +S+     E N+ R  S+ + MPT 
Sbjct: 89  EVESAQVETS---TCNYSEEEFQRREMSRSRSNEFESM-----ETNSNRPISSPKNMPTG 140

Query: 60  SELDEFFTEAEKSIQKQFAEKYNYDIVKDEPLEGRYEWVRLKP 102
            EL+EFF+ AEK+IQK+F EKYNYDIVKD PLEGRYEWV+LKP
Sbjct: 141 FELEEFFSAAEKNIQKKFQEKYNYDIVKDVPLEGRYEWVQLKP 183


>IMGA|CU571152_6.1 Cyclin-dependent kinase inhibitor CU571152.5
           18308-22251 E EGN_Mt090430 20090702
          Length = 181

 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 40/48 (83%)

Query: 54  EKMPTESELDEFFTEAEKSIQKQFAEKYNYDIVKDEPLEGRYEWVRLK 101
           + MP ESELDEFF+ AEK IQKQF  KYNYDIVKD PLEG YEWV+LK
Sbjct: 133 QNMPEESELDEFFSAAEKDIQKQFQNKYNYDIVKDMPLEGPYEWVQLK 180


>IMGA|Medtr7g064470.1 Cyclin-dependent kinase inhibitor
           chr07_pseudomolecule_IMGAG_V3 12973348-12970246 E
           EGN_Mt090430 20090702
          Length = 208

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 14/90 (15%)

Query: 16  RERRETTPSSQLRPESSDELDSIARPSPEANTLRRSTA-------EKMPTESELDEFFTE 68
           R  RE+TP S +R       DS    +P + T +R+           +PT  E+DEFF  
Sbjct: 122 RSTRESTPCSLIR-------DSSVIHTPGSTTRQRTNHIIQEHMQRNIPTSYEMDEFFAL 174

Query: 69  AEKSIQKQFAEKYNYDIVKDEPLEGRYEWV 98
           AEK  Q  F EKYN+D+V D PL GRYEWV
Sbjct: 175 AEKQQQALFMEKYNFDVVNDVPLPGRYEWV 204


>IMGA|Medtr4g129380.1 Cyclin-dependent kinase inhibitor
           chr04_pseudomolecule_IMGAG_V3 30753201-30754286 E
           EGN_Mt090430 20090702
          Length = 153

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 59  ESELDEFFTEAEKSIQKQFAEKYNYDIVKDEPLEGRYEWVRL 100
           E+E+DEFF   E+  +K+FAEKYN+DIV+D PLEGRYEWVRL
Sbjct: 111 EAEIDEFFANFEREERKRFAEKYNFDIVRDMPLEGRYEWVRL 152


>IMGA|Medtr1g087110.1 Cyclin-dependent kinase inhibitor
           chr01_pseudomolecule_IMGAG_V3 17448522-17446474 E
           EGN_Mt090430 20090702
          Length = 222

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 11/93 (11%)

Query: 16  RERRETTP------SSQLRPESSDELDSIARPSPEANTLRRSTAEKMPTESELDEFFTEA 69
           R  RETTP      S  LRP  S    +    S EAN   R+    +P   E +E+F + 
Sbjct: 135 RSARETTPVHLIMRSDVLRPPRSITKRTF---STEANP--RTEQPTIPISPEFEEYFAKH 189

Query: 70  EKSIQKQFAEKYNYDIVKDEPLEGRYEWVRLKP 102
           E   Q++F EKYN+D V ++PL GR+EW ++ P
Sbjct: 190 EAEQQREFMEKYNFDPVTEQPLPGRFEWEKVSP 222